Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0419 ATGCCTGTCACAAACACAACAACACCAACTGTGGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTCAACCACCATCAGCACCCCATTTCAGAAACCGATCCAAACCCTCAAATCCCTTCCATTATCCAATCCACTAGGTGCAAGTCTACCATTTCCTCCTTGCTCCTCTCCACTTTCTCCAACAACACCTCCTCCAACAATGACACTCCCACCACCTTCAATGCCACTGCCCATAGCAAGAAAAAAAGCAACTTTTCTGCATCAACCTTCAGAGGGTTGGGGTGCACCGCCGGAGCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGAAAGAAAACAAGAAAAAAGAAGCACAAGAGAAGCAGCAGCAGCAGCAAGAACAAGACTTTCCATGGTGGGGTTCTAGAAGGGTCCAATCCAGAGTGCGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACAGATGCTGCTGCTGCTGCCTCTGTTGATTGTGTTGTGGCCAGGAAGAATGTCTCTTCTGCAAGAGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACTGAAACCTTCACTTTTCTGGACAGTACTGATCCTGACATTTTCACACCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTAATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGGTTGCCTCTAATATACATATAATGATGCTCCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAAAGACTGGAGACTTGATGTTGATAACATGTCCTATGAGCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATCTATCACTTTCAGTGTATAAAACAATGGGCTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCGGCTCGACACTGA 1152 0.4609 MPVTNTTTPTVAEHIKWRRPRNQFNHHQHPISETDPNPQIPSIIQSTRCKSTISSLLLSTFSNNTSSNNDTPTTFNATAHSKKKSNFSASTFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRSSSSSKNKTFHGGVLEGSNPECVDFQDVWCGPGIGFSTDAAAAASVDCVVARKNVSSARGKIDVDKITHRERSSYVGRRTETFTFLDSTDPDIFTPRSASDSYGTATYYRNVRDPSSDGFAEVASNIHIMMLQGSLLMGGQLNSHDHFKDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLQFWDDTSKHQVDKECSICQEEYEAGNELGRLNCEHIYHFQCIKQWAAQKNFCPVCKQQVAARH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0419 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 381 IPR013083 -
Gso8g0419 383 MobiDBLite consensus disorder prediction 114 142 - -
Gso8g0419 383 SMART ring_2 335 375 IPR001841 -
Gso8g0419 383 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
Gso8g0419 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 383 IPR045191 GO:0061630
Gso8g0419 383 Pfam Ring finger domain 333 376 IPR001841 -
Gso8g0419 383 SUPERFAMILY RING/U-box 326 380 - -
Gso8g0419 383 MobiDBLite consensus disorder prediction 119 134 - -
Gso8g0419 383 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 6 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0419 Gso-Chr8 3894122 3898804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0419 11 290 C3H Transcription Factor Family AT1G73760 41.472 1.31e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0419 - - gsj:114421246 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2064 5 43628955 43632830 Gso8g0419 8 3894122 3898804 GST