Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0413 ATGGTGAAGCATGCACAGCTGGGTTTTGAAGGTTCTTTCATTTTTTATCTTGTTTTGGTTCTTTCTTTCCTTGTTATCTCAACTAGGTGTCAAGATGCAGAGGTAATGGGAATATTGAAGATCATGATTAATGCCCCCATTAGCTTCCAATGGACAAACCCAGATGTATGCAAATGGAGACATGTTACGTGTGATTCATCTAAACGTGTGACAGCTATTCAGATTGGGAGCCAGAACCTACAAGGCTCTCTCCCTAAAGAGCTTGTCAAGTTAACATCATTGGAACGTTTTGAGTGCCAATTCAATAGTCTCACAGGGCCATTCCCCTATCTCTCAAAATCCTTGCAAAAGTTGGTAATCCATGACAACAAGTTCAGCTTCATTCCCAATGATTTCTTCAAAGGTATGAGCCATTTGCAAGAAGTGAGAATTGATGACAACCCTTTCTCTCAATGGCACATTCATGACACTCTCAGGGATTGTGTTGCACTCCATACTTTCAGTGCACAAAGTGTTGGCCTTGTGGGCACCATCCCAAACTTTTTTGGCAAAGATGGTCCATTTCCAGGTTTGGTTCTCTTGGCTTTATCTGATAATTTTCTAGAAGGTGCATTGCCTACAAGCCTATCGGATAGTTCAATAGAGAACCTTTTGGTCAATGGACAAAATAGCTTATCTAAACTTAATGGCACCCTTGTTGTGTTACAAAACATGAAGTCTTTGAGGCAAATTTGGGCTAACGGAAATTCATTCACTGGTCCTATACCAGACTTGTCACATCATGATCAACTTTCTGATGTGAATTTAAGGGATAACCAGTTAACTGGTGTAGTGCCACCCTCTTTAATCTCTCTTCCAAGTTTGAAGTTTGTGAACTTAACCAATAATTTTCTTCAAGGATCCTCTCCCATTTTCAAATATGGGGTAGGAGTTGACAATAGCATGGATAAAGGGAAAAACCAATATTGTACAGACGTGCCAGGGCAACCTTGTAGTCCGCTTGTAAATTCTTTATTATCTATTGTTGAGCCTATGGGTTATCCTCTTAAGTTTGCTCAAAATTGGCAAGGAAATGATCCATGTGCCAATAAATGGACAGGTATAATTTGCTCTGGGGGAAACATTTCAGTTATCAACTTTCAAAACATGGGTTTGTCTGGCACTATTTGTCCATGTTTTGCCAAATTTACATCTGTGACAAAGTTGCTTCTTGCTAACAATGGTTTCATTGGTACCATACCAAATGAACTTACTAGTTTGCCTCTTTTGCAAGAGTTGGATGTTTCCAATAATCATTTATATGGCAAAGTGCCACTATTTCGTAAAGATGTGGTTCTTAAATTAGCTGGGAATCCTGATATTGGTAAGGATAAACCAACTAGCTCAAGTTTCATCAACAATGGTAGCAATCATAATACTACAATAATTATTGGTATTGTGGTAGTTGTTGTTATTATACTTATTAGCGGGGTTTTAATACTTGTTAAGTTCAAGAGAAAGTTGGAGCATGTGAGGAAAACTCAAAATCCACCTGTAATTATGGTACCTTCTCGCCGTTATGGGGATGGAACTACTAGTGCATTATTAAGTCCTATGGGTAGTGTTTACCAGGTGGAAGATCATAACATGTTAATTTCAGTTCAAGTTTTGAGAAATGTTACCAACAATTTTAGTGAAAAAAACATATTGGGGAAAGGGGGGTTTGGCACTGTATACAAAGGAGAGTTACATGATGGGACAAAGATTGCAGTGAAAAGGATGCAATCAGCAGGATTAGTGGATGAGAAAGGATTGAGTGAGTTTACAGCCGAAATTGCAGTGCTTACTAAGGTTCGGCATATAAATTTGGTTTCACTTTTGGGATTTTGCTTGGATGGAAGTGAAAGACTTCTTGTGTATGAACACATGCCTCAAGGTGCTTTAAGTAAACATTTGATTAATTGGAAAAGTGAAGGGCTAAAACCACTTGAATGGAAAACAAGGCTTGGTATTGCCTTAGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAACAAATTTTTATCCATAGGGATCTCAAACCATCCAACATCTTGCTTGGAGATGATATGCGCGCCAAAGTATCAGACTTTGGATTAGTTCGACTTGCTCCTGAAGGAAAAACCTCGTTTCAAACTAAACTTGCAGGAACTTTTGGATACATGGCACCAGAGTACGCAGCCACTGGACGACTTACAACAAAGGTTGATGTATATAGTTTTGGAGTGATCCTTATGGAGATGATAACTGGAAGGAAAGCACTTGATGACAACCAACCAGAAGAGAACGTCCACCTTGTTACATGGTTTCGTAAGATGTTATTGAACAAAAATTCATTTCAAACAACCATTGACCCAACAATTGAAGTTGATGCGGAAACCTTAGTCAATATTAACATTGTTGCTGAGTTAGCAGGGCATTGTTGTGCGAGGGAGCCTTATCAACGTCCTGATATGAGTCATGTAGTCAATGTGTTATCACCTCTTGTTGAGGTGTGGAAGCCTTCAGAAACAAATGTTGACGACATATATGGAATTGACTATAATATGACATTACCAGAAGCACTCCAAAGGTGGAAAGATTTTGAAGGAAGTAGCACCACCCTAGAATTAACATCTCCTTCTTCATCAGTGCTTCTTAATGGAAACAACACAAAGTCAAGCACATAA 2694 0.3886 MVKHAQLGFEGSFIFYLVLVLSFLVISTRCQDAEVMGILKIMINAPISFQWTNPDVCKWRHVTCDSSKRVTAIQIGSQNLQGSLPKELVKLTSLERFECQFNSLTGPFPYLSKSLQKLVIHDNKFSFIPNDFFKGMSHLQEVRIDDNPFSQWHIHDTLRDCVALHTFSAQSVGLVGTIPNFFGKDGPFPGLVLLALSDNFLEGALPTSLSDSSIENLLVNGQNSLSKLNGTLVVLQNMKSLRQIWANGNSFTGPIPDLSHHDQLSDVNLRDNQLTGVVPPSLISLPSLKFVNLTNNFLQGSSPIFKYGVGVDNSMDKGKNQYCTDVPGQPCSPLVNSLLSIVEPMGYPLKFAQNWQGNDPCANKWTGIICSGGNISVINFQNMGLSGTICPCFAKFTSVTKLLLANNGFIGTIPNELTSLPLLQELDVSNNHLYGKVPLFRKDVVLKLAGNPDIGKDKPTSSSFINNGSNHNTTIIIGIVVVVVIILISGVLILVKFKRKLEHVRKTQNPPVIMVPSRRYGDGTTSALLSPMGSVYQVEDHNMLISVQVLRNVTNNFSEKNILGKGGFGTVYKGELHDGTKIAVKRMQSAGLVDEKGLSEFTAEIAVLTKVRHINLVSLLGFCLDGSERLLVYEHMPQGALSKHLINWKSEGLKPLEWKTRLGIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKTSFQTKLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRKALDDNQPEENVHLVTWFRKMLLNKNSFQTTIDPTIEVDAETLVNINIVAELAGHCCAREPYQRPDMSHVVNVLSPLVEVWKPSETNVDDIYGIDYNMTLPEALQRWKDFEGSSTTLELTSPSSSVLLNGNNTKSST* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0413 897 CDD STKc_IRAK 563 837 - -
Gso8g0413 897 Gene3D Transferase(Phosphotransferase) domain 1 636 854 - -
Gso8g0413 897 SUPERFAMILY L domain-like 30 305 - -
Gso8g0413 897 SUPERFAMILY L domain-like 337 439 - -
Gso8g0413 897 ProSiteProfiles Protein kinase domain profile. 557 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0413 897 Gene3D Phosphorylase Kinase; domain 1 526 635 - -
Gso8g0413 897 ProSitePatterns Protein kinases ATP-binding region signature. 563 585 IPR017441 GO:0005524
Gso8g0413 897 Pfam Leucine rich repeat N-terminal domain 337 371 IPR013210 -
Gso8g0413 897 Pfam Leucine rich repeat N-terminal domain 40 65 IPR013210 -
Gso8g0413 897 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 12 896 - -
Gso8g0413 897 SMART serkin_6 557 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0413 897 Pfam Protein kinase domain 558 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0413 897 PANTHER OSJNBA0070M12.3 PROTEIN 12 896 - -
Gso8g0413 897 Gene3D Ribonuclease Inhibitor 31 329 IPR032675 -
Gso8g0413 897 Gene3D Ribonuclease Inhibitor 334 458 IPR032675 -
Gso8g0413 897 SUPERFAMILY Protein kinase-like (PK-like) 535 834 IPR011009 -
Gso8g0413 897 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0413 Gso-Chr8 3834540 3837951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0413 70 834 Receptor kinase-like Gene Family AT5G07280 31.365 2.03e-79 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso8g0413 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0413 - K00924 gmx:100788903 1761.12