Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0404 ATGGTGAAATCGAACGAGAACGGTTCTGGTTCCGTTTCGGTGCCTCCTTTCCTGAAAAAATGTTACGATATGGTGGAAGACCGCAACACTGATTCTATCATCCGTTGGAGCGATGGCGGTGACAGCTTTGTCATCTCCGACATCACTCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAGAACTTTGTTAGAGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAAGCATTGCCACAGCAAAACAATTGTGATGAACCATCACAAGAAGCACCGTATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACGCAAGAATTGGTCAAACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTTTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCATTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCTGTAGTTCCTCTGTCTCCTGGTTTCGAAAAGCAACCAGAACCCGAGCTTTCTGCAGAAGGGCTAAAAGACTTGTGCGTCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTATCTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTAGGTAGTCCTTTCATGGGAAACATTCAAGATTCTAATAAAGAAAGTGAGGGGCACACCAATGGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGA 1095 0.41 MVKSNENGSGSVSVPPFLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHSADQQKALPQQNNCDEPSQEAPYHGLWKEVENLKLDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWHLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPGFEKQPEPELSAEGLKDLCVSSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFMGNIQDSNKESEGHTNGGMEMEPTISETPNENSRTFESMIVEMEKTRE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0404 364 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g0404 364 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g0404 364 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g0404 364 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 348 - -
Gso8g0404 364 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g0404 364 Gene3D - 10 107 IPR036388 -
Gso8g0404 364 MobiDBLite consensus disorder prediction 106 131 - -
Gso8g0404 364 MobiDBLite consensus disorder prediction 320 352 - -
Gso8g0404 364 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 348 IPR027725 -
Gso8g0404 364 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g0404 364 MobiDBLite consensus disorder prediction 337 352 - -
Gso8g0404 364 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso8g0404 364 MobiDBLite consensus disorder prediction 114 128 - -
Gso8g0404 364 SUPERFAMILY "Winged helix" DNA-binding domain 13 106 IPR036390 -
Gso8g0404 364 Coils Coil 140 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0404 Gso-Chr8 3747770 3750621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0404 14 315 HSF AT1G67970 50.000 1.11e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso8g0404 HSF_DNA-bind 9.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0404 K09419 - gmx:100813694 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2051 5 43494515 43497230 Gso8g0404 8 3747770 3750621 GST