Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0399 ATGGCCAAAGTTTCCTCCGACGAGAAGGTTCTTTATCAATTCCCGGCAAATCTTAGGGTCCTTGCCGTTGATAATGACCCCTCAACTCTTGAGTTCATCAAGAACACATGCAGTCAATGCAAATACGAGGTTACCATACACACTGAATCTCCACTTGCATTGAATCTTGTGCGGGAAAAAAAAGATCGTATTGATGTGATACTCATCGAGGTTCATATGCCAACCATGAATGGGTATGAATTCCTTCAGCATGTCAGCAAGGAAATTGATGTTCCTGTTATTGTGATGTCTCTTGATTACAGCAAGGATACTGTGATGAAGGCTGTTCAACTTGGGGCGTGTGATTTTTGGATTAAACCTTTGCATGAGCATCAATTCAAGAATATGTGGACGCATGTTTCTAGGAAAGCCCTGAATGAAAATAAGATACAAAAGGGTTTTGGCAGCTTGGAAGATGATGGCAGGGGAAGAAAACTAGGGAATGATAATTCTGAATTTGCTTCTTTTGATGTCGTGAGAGATCAAAGCAATGGCAATAGCAGTTCCAGGGAAGCTGCTGCTGATGTTGATGAATCGGAGCATGAGCATTGTGGTCCCTCAACAAAGAAGCCCCGCGTAATATGGTTACCAGAACTGCATCGTAAATTCGTCAAGGCTGTCAATAAACTTGCCCTTGATCAGGCTGTGCCAAAGAGAATTCTTCAAGAGATGAATGTACCAGGTTTGACAAGACAGAATGTTGCTAGTCATTTACAGAAATATAGAAATTTTTTGAAGGAAAAATCTAGAGTGACACAGACACAGGAACACACTGAGATGCCATTGCCTAACATGGTTCCAGGGACTATAAAAAACAGGGTAGGTGCATGTGAAAGACACGCTGAACAAGCTTTGGCAGAATGTCTTTCTAACATTACCAATAATTTTCCTCATCCTCAGCCCATAAGGACTCAAGCTGATCCGTCTATATACGGAGCACGACCCCCATCTAATGCATTGGCTATTCAGAGAAGCAATGCGTTAGTGGGTTCATTGCAGCAGCAGCAGCAGCAGCTGTCACTGATCAATCAACAAATTTCTCCAATCATCTCTCGGCAATCTTCCATGATGATTTCTGGAAATCCAGCTTCTGTCTTTAGGAATAATGATTTCGGTTTACTGTCGCCTCAAACTAGTAATCCACTCAGCGTTGCTCAAATCCATGGTGGAAACACCACAGGTGGAAGCCGTCTTAATCGGTATACTGCTACTACAACTTCCATTACCCAACAGCTTCAAAATTCAAGTTTGACAAGTGGTGCTGTGAGATCTTTTCCTGCATCAGTGCCTCCCGATGGTTCACTCTACCAAGAATCTCCTAACATATCGGCAAGTGGTTTTAATAACCAATTTTTTTCCACAGATATAGATGATAACACAACAAATGAGGAGCTAAATTCAAGGAATAATCCAGAGAAGGATCACACGCTCTCAAAATGA 1479 0.4199 MAKVSSDEKVLYQFPANLRVLAVDNDPSTLEFIKNTCSQCKYEVTIHTESPLALNLVREKKDRIDVILIEVHMPTMNGYEFLQHVSKEIDVPVIVMSLDYSKDTVMKAVQLGACDFWIKPLHEHQFKNMWTHVSRKALNENKIQKGFGSLEDDGRGRKLGNDNSEFASFDVVRDQSNGNSSSREAAADVDESEHEHCGPSTKKPRVIWLPELHRKFVKAVNKLALDQAVPKRILQEMNVPGLTRQNVASHLQKYRNFLKEKSRVTQTQEHTEMPLPNMVPGTIKNRVGACERHAEQALAECLSNITNNFPHPQPIRTQADPSIYGARPPSNALAIQRSNALVGSLQQQQQQLSLINQQISPIISRQSSMMISGNPASVFRNNDFGLLSPQTSNPLSVAQIHGGNTTGGSRLNRYTATTTSITQQLQNSSLTSGAVRSFPASVPPDGSLYQESPNISASGFNNQFFSTDIDDNTTNEELNSRNNPEKDHTLSK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0399 492 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gso8g0399 492 SUPERFAMILY CheY-like 17 142 IPR011006 -
Gso8g0399 492 Gene3D - 200 261 - -
Gso8g0399 492 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 368 IPR045279 GO:0009736
Gso8g0399 492 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Gso8g0399 492 MobiDBLite consensus disorder prediction 173 202 - -
Gso8g0399 492 MobiDBLite consensus disorder prediction 460 492 - -
Gso8g0399 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 259 IPR017930 -
Gso8g0399 492 MobiDBLite consensus disorder prediction 186 202 - -
Gso8g0399 492 SMART REC_2 18 130 IPR001789 GO:0000160
Gso8g0399 492 MobiDBLite consensus disorder prediction 460 479 - -
Gso8g0399 492 Gene3D - 17 146 - -
Gso8g0399 492 SUPERFAMILY Homeodomain-like 201 259 IPR009057 -
Gso8g0399 492 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 257 IPR006447 GO:0003677
Gso8g0399 492 CDD REC_typeB_ARR-like 20 133 - -
Gso8g0399 492 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 13 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0399 Gso-Chr8 3711319 3713485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0399 4 268 Response Regulator Gene Family AT2G25180 38.007 1.14e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso8g0399 Response_reg 5.6e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0399 - K14491 gmx:102659569 961.059