Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0396 ATGGGAAGTAGTTGCTTGTGCTCACTCTTCATTTTTGAATCAGACATGGCCATGCCAAAAGAGAAAGAGGATGTTCAGAACAGTGGGAAGAGATTGAAATGTACGAGGAATGAAGAAGAAGAAAAAGAACAATATGAACAAGTTGAAGCTGATGAAGAAGAAGAAGAAGAAGAAGACAGTGAGCTTCCTCTAAAGCTAGGATTGTTCTTCTACCCAACAATACCCACTTCCTTTGTTGTATCTGATGCTCTTGAACCCGATTTTCCCATCATATATGTCAACAAGGTCTTTGAAATCGCCACTGGATATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTGCAGTATAGAGATCGTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGCACTCCTTTGGTGAACAGAGTGAGACTTACACTAATTCATGATGATGACGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCCGAGGCAAATATAGATCTGAACCGTGTCTCATATCCAGTCTTCAAAGAGACTTGCAATCAAGATTTTGACAAGAATGGTAAATATACTCCTAAGAGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGCAGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGCTTGACACCCAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGGTCCGTCAATTAACAAAGAATGAGCATGTCAGGAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACGGGCACATTGGAACTGATGACCAAGAAGATGGGATGGGGTCGCCTGACTCGGGAACTTACCACTCTTGAAGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCACCCGGAAGGTGGGGCCACACGCTCTCGTGTTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTTTGTGGTGGAACCCCACCACTTCCTAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGCGGGTGCACAGACACCGGGGTACTTCTTAGTGACACGTATTTACTGGACCTCACAACAGATAATCCAATATGGAGAGAAATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGCCACTCACTCTCAGTCTATGGGAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTATACAATTGACTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGCGCATTCACGGGTTTAGCCAGTCAAAGTGCTGTTGTTCCTCCTCCTAGGCTGGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTGAATGAGTTGCACGAGTTATGCTTGGCAAGTCGACATGACTCTGACCTGTGA 1944 0.4635 MGSSCLCSLFIFESDMAMPKEKEDVQNSGKRLKCTRNEEEEKEQYEQVEADEEEEEEEDSELPLKLGLFFYPTIPTSFVVSDALEPDFPIIYVNKVFEIATGYRADEALGRNCRFLQYRDRRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRVRLTLIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQDFDKNGKYTPKSGQSLYSQHQEMCSILQLSDEVLAHNILSRLTPRDVASIGSVCRRVRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKMGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDTGVLLSDTYLLDLTTDNPIWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRHDSDL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0396 647 Pfam Galactose oxidase, central domain 328 378 - -
Gso8g0396 647 SUPERFAMILY F-box domain 226 288 IPR036047 GO:0005515
Gso8g0396 647 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 25 644 - -
Gso8g0396 647 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 185 IPR035965 -
Gso8g0396 647 Gene3D - 227 278 - -
Gso8g0396 647 ProSiteProfiles PAS repeat profile. 90 145 IPR000014 -
Gso8g0396 647 Gene3D - 304 508 IPR015915 GO:0005515
Gso8g0396 647 SUPERFAMILY Galactose oxidase, central domain 315 632 IPR011043 -
Gso8g0396 647 Pfam Galactose oxidase, central domain 442 493 - -
Gso8g0396 647 Pfam Galactose oxidase, central domain 393 440 - -
Gso8g0396 647 Gene3D - 509 642 IPR015915 GO:0005515
Gso8g0396 647 MobiDBLite consensus disorder prediction 44 58 - -
Gso8g0396 647 Pfam F-box domain 234 271 IPR001810 GO:0005515
Gso8g0396 647 MobiDBLite consensus disorder prediction 19 58 - -
Gso8g0396 647 CDD PAS 74 184 IPR000014 -
Gso8g0396 647 Pfam Kelch motif 552 599 IPR011498 GO:0005515
Gso8g0396 647 SMART pac_2 149 190 IPR001610 -
Gso8g0396 647 MobiDBLite consensus disorder prediction 19 43 - -
Gso8g0396 647 Pfam PAS domain 84 184 IPR000014 -
Gso8g0396 647 PANTHER ADAGIO PROTEIN 3 25 644 - -
Gso8g0396 647 Coils Coil 35 58 - -
Gso8g0396 647 Gene3D PAS domain 71 196 - -
Gso8g0396 647 TIGRFAM sensory_box: PAS domain S-box protein 89 184 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0396 Gso-Chr8 3698365 3701564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0396 73 186 AGC Kinase Gene Family AT5G58140 42.982 6.12e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0396 K12116 - gmx:100812253 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2045 5 43442372 43445790 Gso8g0396 8 3698365 3701564 GST