Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0394 ATGGTCGCAAGAAGAAAAGTCCTTAACTTGTTATCAACCTTAATTCCCCACCACGCCAATGCATTTTCTCGTCACCCGCACGACCACAACCCCTTTACCAAAATCCCCAAAACCCTTTTTAGGGTTTATTATGGAACCCAATCATCAGCATCGAAACTCCCCGAATATGAGATGCCATCGGTGACGTGGGGCGTGATCCAGGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGATTACCTCAAGGGTTTGGGAATCATCCCCGACGAATTGCACGACCTCGAGCTTCCCTCCACCGTCGACGTCATGCGCGAGCGCGTCGAGTTTCTCCAGAAATTAGGTCTCACCGTCGACGACATCAACAACTACCCTCTAATGTTGGGGTGCAGTGTCAGAAAAAACATGATCCCCGTCTTGGGGTACTTGGAAAAAATTGGGATCGCAAGGCCCAAGCTTGGTGGATTTGTTAAGAATTACCCGCAGGTATTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTTAGGGGGCTTGATGTGGAGAAAGATGATATTGGCTATGTGTTGCAAAAGTACCCTGAACTTCTTGGCTTCAAGCTTGAGGGTACTATGAGCACTTCAGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATTGGTCCAATGGTCACTCAGTATCCTTATTTATTAGGGATGAGAGTTGGGACTGTGATAAAGCCGATGATTGATTACTTGGTCGATTTAGGGCTGCCGAAGAAGGTTTTGGCCAGGATGTTGGAGAAGAGAGCTTATGTTCTTGGCTATGATCTTGAAGAGACTGTGAAACCCAATGTGGAATGTTTGATTAGCTTTGGTGTTGGGAGGGATTGTTTGGCTTCGATTATTGCTCAATATCCGCAGATTCTCGGGCTGCCTCTTAAGGCTAAGTTATCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGACCCTGAAGGGTTTGCACGCGTGGTGGAGAACATGCCACAGGTGGTTAGTCTCCACCAACATGTGATTATGAAGCCGGTTGAGTTTCTCCTTGGAAGGACGATACTGGCACAGGACGTGGCAAGTATGGTGGTCAAGTGTCCTCAGTTGGTGGCACTGAGAGTTGAGCTCATGAAGAACAGCTATTACTTCTTCAAGAGTGAGATGGGGAGGCCCTTGCAAGAGCTTGTGGAATTCCCTGAGTATTTTACTTATAGTTTGGAGTCCAGGATCAAACCCAGATACCAGAGGCTGAAGAGTAAAGGGATAAGGTGTTCCTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAGAGTGTAGGCCCCAGATTCTGTATGGGAGGGAAATTAGAGCTACCAGGGAATGGCCTAGTGTCAGATGAGGAAGAGGAGAGTGATGATGAACTATTATACAGACGAACTGTTTCTCTTTAG 1500 0.466 MVARRKVLNLLSTLIPHHANAFSRHPHDHNPFTKIPKTLFRVYYGTQSSASKLPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKLGLTVDDINNYPLMLGCSVRKNMIPVLGYLEKIGIARPKLGGFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPMIDYLVDLGLPKKVLARMLEKRAYVLGYDLEETVKPNVECLISFGVGRDCLASIIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLHQHVIMKPVEFLLGRTILAQDVASMVVKCPQLVALRVELMKNSYYFFKSEMGRPLQELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNGLVSDEEEESDDELLYRRTVSL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0394 499 PANTHER CGI-12 PROTEIN-RELATED 47 482 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 PANTHER EXPRESSED PROTEIN 47 482 - -
Gso8g0394 499 Gene3D Transcription termination factor 3, mitochondrial 246 459 IPR038538 -
Gso8g0394 499 Gene3D Transcription termination factor 3, mitochondrial 105 245 IPR038538 -
Gso8g0394 499 SMART mt_12 227 258 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 336 366 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 371 402 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 191 222 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 263 294 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 SMART mt_12 299 331 IPR003690 GO:0003690|GO:0006355
Gso8g0394 499 Pfam mTERF 141 449 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0394 Gso-Chr8 3686239 3688050 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso8g0394 mTERF 5.6e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0394 K15032 - gmx:100809590 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0394 8 3686239 3688050 Gso7g0842 7 9504640 9506952 PCT
Gso8g0394 8 3686239 3688050 Gso9g1473 9 38869146 38871441 PCT