Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0386 ATGGCCACTGGGAAGACGGTTATGTGTTCGCTGAGCCAGTTGCGTCCGCTAACATGCGCATCGACGTCAGCGTCACGATTAGTGCCCCAGCCACCCGACCTCATCAAGTGGGTAACCAGAGAAGGTGGCTTCGTGCACCGCGCCGTCAAGATAACACAACTCGACTCCTCCAACGGACTGGGCCTGGTGGCCAAGGAAGAAATTCCACGTGGCAGTGATCTTATTGTGCTGCCGCACCATCTTCCCTTGCGCTTCACCTCTCTCCAACAAGACCCTTCTCTGCTCCATCACTTGGCGCGCCAAGTCCCTGAGGAACTATGGGCAATGAAGCTGGGTTTGAAGCTTCTGCAAGAAAGGGCAAAAGTTGGATCGTTCTGGTGGCCATATATAAGTAATCTCCCAGAAACATACACCGTGCCTATTTTCTTTTCCGGGGAGGACATAAAGAACTTGCACTATGCTCCTATTCTTCATCAGGTAAACAAAAGGTGTCGATTTCTTCTTGATTTTGAGCGAGAAGTAAAGCGTGCTTTGGTAAGTCTTACACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTATCATCTAGAGCGTTTCGATTGTATGGTGAAAAGGATCCCAATGGGATACGCATTGACATACCAATGATGCTCCCCCTAATTGATATGTGCAATCATAGTTTCAATCCGAATGCTAGAATTGTTCAAGAACAAGATACCAGTAACTCAAGGATGCAAGTGAAGGTTGTGGCCGAGACAGCAATCAAAGAAGATGATCCTCTGTTACTTTGCTATGGATGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGATGCACTCAAACCCTTATGATTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACGGCAGCTGGAGTTTCTTCACCAAACTTCTCAGCACCTGTTCCATGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTGCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGCCCGCTTGTTGGCTGCATTGAGGGTACTTCTTTCAAGTAATGTGGAAACTGTGCAGAAGTATGACCTCAGCACACTCCAGTCTTTAGATGCCGAGGCTCCTCTAGGTGTTGCAAATGAGATAGCTGTGTTTCGCACCCTAATTGCTTTGTGTGTCATTGCACTGGGACACTTTCCCACCAAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCTATTCAGTACAGAATCCAAAAGAAATCTGTGATTATAGACGTAATGAGAAATATCTCAAGGAGGTTAAAGCTTCTATCATCAAAGGAAACAGCAACCGCAGAAGGCTAA 1419 0.4588 MATGKTVMCSLSQLRPLTCASTSASRLVPQPPDLIKWVTREGGFVHRAVKITQLDSSNGLGLVAKEEIPRGSDLIVLPHHLPLRFTSLQQDPSLLHHLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFSGEDIKNLHYAPILHQVNKRCRFLLDFEREVKRALVSLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGIRIDIPMMLPLIDMCNHSFNPNARIVQEQDTSNSRMQVKVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVMHSNPYDCIELKYDGALLDAASTAAGVSSPNFSAPVPWQELILSQLNLAGETADLKVSLGGQETVEARLLAALRVLLSSNVETVQKYDLSTLQSLDAEAPLGVANEIAVFRTLIALCVIALGHFPTKIMDDESLLKQGASGSTELAIQYRIQKKSVIIDVMRNISRRLKLLSSKETATAEG* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0386 472 SMART set_7 47 283 IPR001214 GO:0005515
Gso8g0386 472 Pfam SET domain 59 277 IPR001214 GO:0005515
Gso8g0386 472 PANTHER F21J9.27 6 469 - -
Gso8g0386 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 469 - -
Gso8g0386 472 ProSiteProfiles SET domain profile. 49 277 IPR001214 GO:0005515
Gso8g0386 472 Gene3D set domain protein methyltransferase, domain 1 6 290 - -
Gso8g0386 472 SUPERFAMILY SET domain 29 295 IPR046341 -
Gso8g0386 472 CDD SET_LSMT 48 291 - -
Gso8g0386 472 Gene3D - 328 469 IPR036464 -
Gso8g0386 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 466 IPR036464 -
Gso8g0386 472 Pfam Rubisco LSMT substrate-binding 327 447 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0386 Gso-Chr8 3630530 3633360 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso8g0386 SET 9.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0386 - - gmx:100778387 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2035 5 43367934 43370865 Gso8g0386 8 3630530 3633360 GST