Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0375 ATGTTCAAATTTGCATTTTTTTTTGCCTTTTTTCTTTTTTTCACTACTAATACTACCTCCGGAAGCCACAACAACACATCATCCTGTCCTACTAACAGCTGCAAAAATGGACCTAAGATCAGTTACCCATTTTGGTTTTCCCAAGGTTCCCTTCCTGATCAATATTGCGGTTACCAAGAACTTGGGCTTTTTTGTGATGACAATGGCAACGCTATTTTTTCTCCACCCCCAGGTAAATACTATTACGTAAAAGACATAGACTATGCAAACCATAGACTTAAGCTCGTTGATTTTGACACTGCAAACATAACTTGTCCAAGGGCACTTCACAGCTTTCCCTTGGGCAACCTACCACTCTCTCACTCCCCTTTGAACTCAAACCTCAACTTTTACTACAACTGCACTCACTACCCTTCTTCTGGTGTGCCTCCTATCGAGTGTCTAAGTTCTGGGGCAAACCGGTCTTTTGTGTTTCTGATGGGGAACGAGACCGAAGGTTTCGACTGTCAGGAAAAAGTTGTGGTGGCAGTGTTGAAGGATCAGATCACAAGTCATGATGATGGCGGCTTGATCAACGAGTTTGCTGGGGCCATGAATGAAGGCTTCTTGCTTGATTGGCAAACAACTACGAATTGCGCCGAGTGCGAGGCTAGTAATGGAACTTGTGGTTACAGTAACACCAGGAAGGAGACGCTGTGCTTTTGCAAGGATGGCACCACAAAAAGCAATACATGTCAAGGGGGAGGGGGAAGCAGAACCGGTTTGTCAAGGTTAATTATAGGTTTAATAATAGGTGGAGGAATTGGTGCACTGCTGATATGCATCCTAGTTTACAGTTTTAGACGAAAATTATCACCAATTGTGTCAGAAATCCGGAAGGTCAAAAAGATTCATCAAGACATTGAGGCCCTCATAAGAAGTAATGGACCTCTTCCCATAAAAAGATATTCATATTCAGAGATAAAGAAAATGACCAATTCTTTTCAATCCAAACTGGGACAAGGTGGCTATGGTCAAGTATATAAAGGAAATCTAAGCAACAACTCTCCTGTGGCAGTGAAGGTACTGAATGCTTCCAAAGGGAACGGGGAAGAATTTATGAACGAAGTTATAAGCATCAGTAGAACGTCCCATGTAAATATTGTTAATCTCCTTGGTTTTTGTCTTGAAGGCCAGAAGAAAGCACTTGTCTACGATTACATGCCCAATGGATCCCTTGAAAAGTTTATACACAACAAGAATTTGGAAACCAATCCACCTTTGAGTTGGGAAAGATTACACCACATTGCTGAAGGGATAGCTAAAGGACTGGAGTACTTGCATAGAGGGTGCAACACTCGGATATTACATTTTGACATAAAACCAAGCAACATCCTTTTGGACAAAAAGTTCTGTCCCAAAATCTCTGATTTTGGGATGGCTAAGCTCTGCTCAAATACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTATATAGCTCCAGAAGTGTGGAACAGAAACTTTGGAGGGGTGTCATATAAGTCTGATGTCTATAGTTATGGAATGATGATTTTGGAAATGGTCGGAGGAAGGCAAAGTATCAGTATTGAAGCAAGTCATTCAAGTGAGACATATTTTCCTGATTGGATATACAAGCATGTTGAGTTGGGAAGCAATTTAGCATGGGATGAAGGTATGACCACAGATGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTGTGGTGCATACAAACAATCCCATCTGACAGGCCTGCTATGAGTAAGGTGGTTGAAATGTTAGAAGGAAGCATAGATCAGTTGCAAATTCCACCAAAGCCATTCATATTTAGTCCTACCAAAACCCAAGTGGATATTTGCACCACTACTAGTAGCTCTGATTGA 1899 0.4107 MFKFAFFFAFFLFFTTNTTSGSHNNTSSCPTNSCKNGPKISYPFWFSQGSLPDQYCGYQELGLFCDDNGNAIFSPPPGKYYYVKDIDYANHRLKLVDFDTANITCPRALHSFPLGNLPLSHSPLNSNLNFYYNCTHYPSSGVPPIECLSSGANRSFVFLMGNETEGFDCQEKVVVAVLKDQITSHDDGGLINEFAGAMNEGFLLDWQTTTNCAECEASNGTCGYSNTRKETLCFCKDGTTKSNTCQGGGGSRTGLSRLIIGLIIGGGIGALLICILVYSFRRKLSPIVSEIRKVKKIHQDIEALIRSNGPLPIKRYSYSEIKKMTNSFQSKLGQGGYGQVYKGNLSNNSPVAVKVLNASKGNGEEFMNEVISISRTSHVNIVNLLGFCLEGQKKALVYDYMPNGSLEKFIHNKNLETNPPLSWERLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKKFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRNFGGVSYKSDVYSYGMMILEMVGGRQSISIEASHSSETYFPDWIYKHVELGSNLAWDEGMTTDENEICKKMIIVGLWCIQTIPSDRPAMSKVVEMLEGSIDQLQIPPKPFIFSPTKTQVDICTTTSSSD* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0375 632 CDD STKc_IRAK 332 601 - -
Gso8g0375 632 Gene3D Transferase(Phosphotransferase) domain 1 401 608 - -
Gso8g0375 632 SMART serkin_6 326 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0375 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 630 IPR045874 GO:0004672
Gso8g0375 632 Gene3D Phosphorylase Kinase; domain 1 303 400 - -
Gso8g0375 632 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Gso8g0375 632 Pfam Wall-associated receptor kinase C-terminal 151 238 IPR032872 -
Gso8g0375 632 Pfam Wall-associated receptor kinase galacturonan-binding 29 97 IPR025287 GO:0030247
Gso8g0375 632 SUPERFAMILY Protein kinase-like (PK-like) 307 600 IPR011009 -
Gso8g0375 632 Pfam Protein tyrosine and serine/threonine kinase 328 599 IPR001245 GO:0004672|GO:0006468
Gso8g0375 632 PANTHER - 12 630 - -
Gso8g0375 632 ProSiteProfiles Protein kinase domain profile. 326 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0375 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0375 Gso-Chr8 3540246 3542997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0375 30 614 Receptor kinase-like Gene Family AT5G38260 39.216 2.19e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso8g0375 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0375 - - gmx:100781977 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0375 8 3540246 3542997 Gso7g0811 7 8966038 8979156 PCT
Gso7g0809 7 8901504 8907107 Gso8g0375 8 3540246 3542997 PCT