Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0372 ATGGACAAGCTCTTTTTCAACCACTGTTTCATTGGATACTGCCTTCTTTATTCTCTCTTGCTTGTGCATGGCAAACAATTGTCATGCAATGAAACCCCTTACCCCTCTGTGTGCAAGCATTACATTGAAACTACCAAAACATTATCAGCCCTAGATGCTTCACCTTCTTCATTCCATGATATGGCCCTTAAGGTCACCATGGTGCAAGCCATGGAGGCTTATAAACTTGTCTCAAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGGAAGATTGTTTGGAGCTCTATGAAAACACACTTTATCAGCTCAAACGCTCAATGAACTCGAACAATCTAAATGATAGGATGACTTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAATGGTTTCACTGATTTCAACCTTCCCTCTCACCTAAACTACTTCCCTTCCATGTTAAGCAACTTGTCTGGATTGCTTAGCAATTCCTTGTCCATTAGCAAGGCTATGACATTGAGATCATTGTCATCATCACCAACGACCAAACAAAGTGGTGGGCGAAAGTTGCTTTCAGATGGCTTCCCCTATTGGCTGTCACGTTCAGATAGAAAGCTTCTTCAGGAAACAGCATCAAAAGCTGATGTTGTGGTGGCACAGGATGGGAGTGGGAACTATAAGACTATCTCAGAAGGTGTGGCTGCAGCTTCTAGACTCAGCGGGAAAGGGCGTGTTGTTGTGCATGTCAAAGCTGGCGTATACAAAGAGAATATTGATATCAAGAGGACAGTGAAAAACTTAATGATCGTCGGAGATGGGATGGGTGCTACTATTGTTACTGGTAACCACAACGCAATAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTGATGGTGACGGCTTCATAGCTCGGGACATAACATTCGAGAACACCGCGGGACCTCAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCGGACCACTCGGTGTTCTACCGGTGCAGCTTTAGGGGGTACCAAGACACCTTATACGTCTACGCCAACCGTCAATTCTACCGTGACTGTGACATATACGGAACAGTAGACTTCATATTCGGTGACGCCGTGGCGGTGCTTCAAAACTGCAACATCTATGTGAGGAAACCGATGAGCAACCAGCAGAACACGGTAACGGCACAAGGAAGAACCGATCCTAATGAGAACACGGGGATCATCATCCATAACTGTCGTATAACTGCAGCTGGGGACTTGAAAGCAGTGCAGGGCTCTTTCAGAACCTTTCTAGGTCGCCCATGGCAAAAATACTCACGGACTGTCGTCATGAAGAGTGCCCTTGATGGCTTGATTAGCCCCGCAGGTTGGTTTCCGTGGAGTGGAAACTTTGCTCTAAGCACCCTCTATTACGCAGAACATGCGAATACAGGAGCAGGTGCTAGCACAGGAGGGAGGGTTGATTGGGCAGGGTTTCGAGTGATCTCCAGTACTGAGGCTGTGAAATTCACCGTTGGAAATTTCTTGGCTGGGGGATCGTGGATTCCGGGGAGTGGCGTGCCCTTTGATGAAGGTTTATGA 1581 0.4706 MDKLFFNHCFIGYCLLYSLLLVHGKQLSCNETPYPSVCKHYIETTKTLSALDASPSSFHDMALKVTMVQAMEAYKLVSNMDLNNFKDKRAKSAWEDCLELYENTLYQLKRSMNSNNLNDRMTWQSASIANHQTCQNGFTDFNLPSHLNYFPSMLSNLSGLLSNSLSISKAMTLRSLSSSPTTKQSGGRKLLSDGFPYWLSRSDRKLLQETASKADVVVAQDGSGNYKTISEGVAAASRLSGKGRVVVHVKAGVYKENIDIKRTVKNLMIVGDGMGATIVTGNHNAIDGSTTFRSATFAVDGDGFIARDITFENTAGPQKHQAVALRSGADHSVFYRCSFRGYQDTLYVYANRQFYRDCDIYGTVDFIFGDAVAVLQNCNIYVRKPMSNQQNTVTAQGRTDPNENTGIIIHNCRITAAGDLKAVQGSFRTFLGRPWQKYSRTVVMKSALDGLISPAGWFPWSGNFALSTLYYAEHANTGAGASTGGRVDWAGFRVISSTEAVKFTVGNFLAGGSWIPGSGVPFDEGL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0372 526 PANTHER PECTINESTERASE 20 525 - -
Gso8g0372 526 SUPERFAMILY Pectin lyase-like 210 525 IPR011050 -
Gso8g0372 526 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 171 IPR006501 GO:0004857
Gso8g0372 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 171 IPR035513 -
Gso8g0372 526 Pfam Pectinesterase 215 511 IPR000070 GO:0030599|GO:0042545
Gso8g0372 526 SMART PMEI_2 17 167 IPR006501 GO:0004857
Gso8g0372 526 SMART complete 249 429 IPR006633 -
Gso8g0372 526 CDD PMEI-like_3 27 144 - -
Gso8g0372 526 Pfam Plant invertase/pectin methylesterase inhibitor 28 167 IPR006501 GO:0004857
Gso8g0372 526 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Gso8g0372 526 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Gso8g0372 526 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 525 - -
Gso8g0372 526 Gene3D - 209 526 IPR012334 -
Gso8g0372 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0372 Gso-Chr8 3507302 3510694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0372 3 526 Carbohydrate Esterase AT1G23200 51.986 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0372 - - gmx:100775898 1055.82