Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0363 ATGGATGACGTCAAAGACAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCTTCTTCCTCATCTGCCAAATTCAAGGGCCAAGGTAGAGTCCTTGGTTCTTCTTCTTCTTCTTCTACACCCGCTAATTCCAATCCTACCCCTCGCCCCTACCCTAATTCGCAGAAACCCTCCTCCTCTTCAGCTGTAACCAATCCCAAACCCTCGCCCCAGAAAACGGAGCAAAATAAAACCACCGATAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCGCAAAATGGGTATTCGCTGAACGTGTTCGAATGCCCCATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACACGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAAGTGATGATGGAAATGGGGTCTCAGAGAGTGATGGTGGGTCTAATGATACTAATACTGAATTGGAGGTTTGTGTTGGGACTTACATATCAGGGAAGCCATCTGAGGGATCGGTTGATGTGATTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGAGAATGTAAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATTAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGGTTTGAACTCAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGTTTCCCTCTGAGGAACAAATAAAATTCATTCAGAGAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCTAAGAGAGACGATTTGCCGTCTGCAACTTCTACCGAGATGGGTCCAAAGGCAGAAACAAAGCCGGTTGACAGACAAGTGAAGGTCTTCTTTGCTGTCCCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTCAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCTGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAAGCAAAAGTTTCCAGGAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGTTTGTCAGCTCAGCATTAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTACTTATCCAACGGCGCGTGATCCCCCATTTTCCGAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAAGACCTAGTACCTTCTGCTCTAATTAAGTTCAAGCCTCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1401 0.4354 MDDVKDKVKGFMKKVNNPFSSSSSAKFKGQGRVLGSSSSSSTPANSNPTPRPYPNSQKPSSSSAVTNPKPSPQKTEQNKTTDKPRKDDGFDPFDSLVTNSNRSQNGYSLNVFECPICKQPFRSEEEVSAHVDGCLNNPVERGSDDGNGVSESDGGSNDTNTELEVCVGTYISGKPSEGSVDVILKLLRNIGREPENVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEFPSEEQIKFIQRAIVLLESQLVQQGPPKRDDLPSATSTEMGPKAETKPVDRQVKVFFAVPESVAAKIELPDSFYKLSAEEVRREAELRRKKIADSQLLIPKSLKEKQAKVSRKRYTKTIIRIQFPDGVVLQGVFAPWETTIALYEFVSSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0363 466 MobiDBLite consensus disorder prediction 1 104 - -
Gso8g0363 466 MobiDBLite consensus disorder prediction 76 92 - -
Gso8g0363 466 Gene3D - 349 442 - -
Gso8g0363 466 Gene3D Classic Zinc Finger 108 139 - -
Gso8g0363 466 Pfam PUB domain 177 251 IPR018997 -
Gso8g0363 466 MobiDBLite consensus disorder prediction 15 46 - -
Gso8g0363 466 CDD PUB 171 261 - -
Gso8g0363 466 MobiDBLite consensus disorder prediction 266 287 - -
Gso8g0363 466 SUPERFAMILY PUG domain-like 176 261 IPR036339 -
Gso8g0363 466 Gene3D - 172 260 - -
Gso8g0363 466 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 465 - -
Gso8g0363 466 MobiDBLite consensus disorder prediction 138 161 - -
Gso8g0363 466 MobiDBLite consensus disorder prediction 56 75 - -
Gso8g0363 466 ProSiteProfiles UBX domain profile. 355 439 IPR001012 GO:0005515
Gso8g0363 466 SMART PGNneu 178 245 - -
Gso8g0363 466 SUPERFAMILY Ubiquitin-like 327 439 IPR029071 -
Gso8g0363 466 Pfam UBX domain 356 406 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0363 Gso-Chr8 3414868 3418713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0363 1 387 C2H2 Transcription Factor Family AT2G01650 57.317 1.77e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso8g0363 UBX 0.00012 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0363 K14011 - gmx:100779271 904.049