Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0350 ATGGAAGAAAAGCTACCTCCTGGGTTCAAGTTCCACCCCACAGACGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCCGATGTTGACTTCACATCCAAAGCTGTAGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCATCGATGGGCGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACCAACCGAGCCACTGAATCAGGGTATTGGAAAACCACAGGAAAAGATAAGGAAATATTTGGTGGTGGAGTTTTGATAGGGATGAAGAAAACCTTAGTCTTTTATATGGGCAGAGCTCCTAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTTGCAAACAAACAACCCTATAGATCTTCAAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAAAAGAGCTCAGCACCCAAGAAACCACAGCAGACATCCTCTTCCCAACCATCTCAAGAGTCTCCTACCTCAATGGTCAACGAATTTGGTGATGTTGACCTACCAAATCTAAATAGCATTGCAAATTCATCCAGTAGCTTCACCAATAATATTGCATACAATATTAATGGTGATCCTAGCAATGCTGTTAACACCAATATGAACTTGACCATGAATTGGCCTTCTGGATTTCTGAATCCAAACCTTTCTGTGAATTCATTGCTTCTCAAGGCATCACAGCTTAGAAATACTTATCAACAAAGAGAAGCTGCGACCAGTAGTGATCATCACTTTGCAACATATGTTCCTCAAGGATTTTCTCACAATAATACTATTGGAACTGAACATCACCTCATGACTCCAAATCTCAGTGCTACTTCTTCTTCTTCCAAAGCTTTAGAGTATTCTTGTGTGCCGCAGCAGGAGCAACCATTTAATATGGACTCCATTTGGTGA 942 0.413 MEEKLPPGFKFHPTDEELITYYLLRKVSDVDFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLANKQPYRSSKEEWVICRVFQKSSAPKKPQQTSSSQPSQESPTSMVNEFGDVDLPNLNSIANSSSSFTNNIAYNINGDPSNAVNTNMNLTMNWPSGFLNPNLSVNSLLLKASQLRNTYQQREAATSSDHHFATYVPQGFSHNNTIGTEHHLMTPNLSATSSSSKALEYSCVPQQEQPFNMDSIW* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0350 313 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Gso8g0350 313 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gso8g0350 313 MobiDBLite consensus disorder prediction 154 175 - -
Gso8g0350 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 248 - -
Gso8g0350 313 PANTHER BNACNNG63190D PROTEIN 2 248 - -
Gso8g0350 313 MobiDBLite consensus disorder prediction 154 178 - -
Gso8g0350 313 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Gso8g0350 313 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0350 Gso-Chr8 3320773 3324179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0350 1 313 NAC Transcription Factor Family AT3G18400 55.655 1.11e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g0350 NAM 8.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0350 - - gmx:100776092 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1995 5 43053926 43057193 Gso8g0350 8 3320773 3324179 GST
Gso8g0350 8 3320773 3324179 Gso7g0790 7 8707141 8710108 PCT
Gso8g0350 8 3320773 3324179 Gso9g1511 9 39370610 39373492 PCT
Gso7g0790 7 8707141 8710108 Gso8g0350 8 3320773 3324179 PCT
Gso9g1511 9 39370610 39373492 Gso8g0350 8 3320773 3324179 PCT