Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0346 ATGAGAGACATGAAAGACGCAGGTGCCCTGGGAGGCAAGACAGCACGAGCCTGCGATAGCTGCGTAAGCAGAAGGGCAAGGTGGTTCTGTGCAGCAGATGATGCTTTCCTCTGCCATGCTTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGACACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGCAACCACAACCACTACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAACAGCAAGCACTTTGCGCTGCAACAGCGTCTCAAAGACGAAGTTCTCTTCAACAACACTAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACAAGAACCGGTGGTTGTGGACAACGATGAAACGGAGGAACAGATGCTGTGTCGCGTGCCCGTGTTCGACCCTTTTGATGTGAGAACCGATGACTTGGATAGCTTTTCTGACATGGATTTTTCTGAATTTGCTGCTGATGTTGAAGGCCGGCTTGACAAAGAAGACGATGAAATAAGTGCGTATGTGGGAGGAGGAGAGGGAGTTCAAGGTGTATTGGCCAAGGTTAAGGGCGAAGAAGAAATTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGATCAGTGATGATGCCTTTCATTGGAATAATATTGAGTCTGTGGTGTCAGATGCCCGGGAAGAGAAGGGGTGTGTGGTGCCATGTGATGGTGGGGTTAGTGAACAAGGAGGAATAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCCCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGATTATGACTTCTCCTTGGGTTTGAGTGGTGTAGATGGAGAAGGAAGAAGCTTAAGGGGACACCTAGATGGTGGAAGAGAAGCAAGAGTGTCGAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA 1116 0.4794 MRDMKDAGALGGKTARACDSCVSRRARWFCAADDAFLCHACDTLVHSANQLASRHERVRLQTASSKATTTTTHAWHSGFTRKARTPRHNNSKHFALQQRLKDEVLFNNTSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDPFDVRTDDLDSFSDMDFSEFAADVEGRLDKEDDEISAYVGGGEGVQGVLAKVKGEEEIDGDVACYLESVFDMISDDAFHWNNIESVVSDAREEKGCVVPCDGGVSEQGGIKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFSLGLSGVDGEGRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0346 371 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Gso8g0346 371 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Gso8g0346 371 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 364 - -
Gso8g0346 371 Pfam CCT motif 316 358 IPR010402 GO:0005515
Gso8g0346 371 CDD Bbox1_BBX-like 17 60 - -
Gso8g0346 371 SMART bboxneu5 13 60 IPR000315 GO:0008270
Gso8g0346 371 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
Gso8g0346 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0346 Gso-Chr8 3274044 3275969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0346 7 358 C2C2-CO-like Transcription Factor Family AT1G25440 41.549 2.77e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso8g0346 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0346 - - gmx:100793296 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1990 5 43010096 43011969 Gso8g0346 8 3274044 3275969 GST
Gso8g0346 8 3274044 3275969 Gso7g0785 7 8651610 8654045 PCT
Gso7g0785 7 8651610 8654045 Gso8g0346 8 3274044 3275969 PCT