Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0344 ATGGCAAGCTCACAAAGACAATCTGCGACAAAACAAGGATCGCCGTCGTCTCAGAAGGGAAATGAAAAGGCAACATCATTTGGTGAGTGCTCTTGGAAGACACTCCGAATAACATATACCGACCCAGATGCTACAGATTCTTCTAGTGACGAAGAAAATGACAAAGTATCAAATGGTGGTCCCAAAAGACGATTCATAGACATAACGAATCCAAATTGGAAGGATCCAAACTGCAAACTTTCCATCAGAAAAGGAAAACGCATATGTTCCAGCAAGTATCTAGGTGTTAGACGTCGACCATGGGGGAAATATGCAGCAGAGATTCGTGACCCGCGTCAAAAGAATTGTCGTAAGCGCTTGTGGCTTGGTTCATATGATACTGAGATAGAGGCTGCAATGACTTTTAATGTAAAAAGGCAAGAGTTTGAGAGAGAAATGGCTCTAGAAAGAGGAGATAATGCATCAGTGCATTCGGAGGGTACTGCCAAAGAAGATTAA 498 0.4257 MASSQRQSATKQGSPSSQKGNEKATSFGECSWKTLRITYTDPDATDSSSDEENDKVSNGGPKRRFIDITNPNWKDPNCKLSIRKGKRICSSKYLGVRRRPWGKYAAEIRDPRQKNCRKRLWLGSYDTEIEAAMTFNVKRQEFEREMALERGDNASVHSEGTAKED* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0344 165 Gene3D AP2/ERF domain 91 148 IPR036955 GO:0003700|GO:0006355
Gso8g0344 165 Pfam AP2 domain 91 134 IPR001471 GO:0003700|GO:0006355
Gso8g0344 165 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 119 - -
Gso8g0344 165 MobiDBLite consensus disorder prediction 41 70 - -
Gso8g0344 165 ProSiteProfiles AP2/ERF domain profile. 92 155 IPR001471 GO:0003700|GO:0006355
Gso8g0344 165 SUPERFAMILY DNA-binding domain 91 145 IPR016177 GO:0003677
Gso8g0344 165 MobiDBLite consensus disorder prediction 1 27 - -
Gso8g0344 165 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Gso8g0344 165 PRINTS Ethylene responsive element binding protein signature 118 134 IPR001471 GO:0003700|GO:0006355
Gso8g0344 165 MobiDBLite consensus disorder prediction 146 165 - -
Gso8g0344 165 SMART rav1_2 92 158 IPR001471 GO:0003700|GO:0006355
Gso8g0344 165 CDD AP2 91 137 IPR001471 GO:0003700|GO:0006355
Gso8g0344 165 PANTHER - 6 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0344 Gso-Chr8 3258700 3262788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0344 33 136 AP2-EREBP Transcription Factor Family AT2G46310 41.880 1.14e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso8g0344 AP2 3.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0344 - - gmx:102661155 343.199