Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0336 ATGACCGAAAATAAGTCAACCAGTAAGATCACTAAGAAACAAGAGACAAAAAAAGTTTCTAGTTTCAGCCATCAGCCCCCTAGAAAGCAACCTCGGAAGGGTGAAAACCCTACTAGACTCATACCTCCTCCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATTTGTAAAAATGCTGCTTGTAGGGCGGTTTTGTCTATGGATGACACATTTTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTGCTCAAGGGGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAGCATGAAAAGGTGGGAGTTATTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTGGATGCTGGAAGAAGCAGCTAACTATAGCTAAGGATGCCCGGCGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTTGATGGAACCTCAAAATTCAAAGATTTGCATCAAACAGTACAAGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGTAGACTCCCTATTGCCAGTGGTATACAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATAGGTGGCTTGCCACTGTTCCTTATGTAAATCCAGATTCCACAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGCCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTCAGGACGAATCACCCACTAAAGATCCTATTTCCATGTTTCCCAAATCTCAGAGGAGGATTTTGGTATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGATACACGTGACTTGGGTCATTCTGAGGCTAAGTGTTTCACCCAGAGCATCGAGATAGTTAAAAACAATCCCTCTTCATCTGTTGCTATGAATAAAGAAAAAGAGAACCTTCTAACTAGGGGTAATTCTTCGGTCTCTAAGATAGGGCCCAATGCCACAACAGAAGGCTACGGATTCAAGGTTCGAGACCTTGGGAAATTTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTGCGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGCCTAGAATTCCAGAAGCACAGTTGCCTTCACTTTCGCGAGTCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGCTGCAAGCAGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGTAAGATCACATGGGAGTGGGGATTCCCAGACCTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATGTGCAGGAAAAGGATAGCAAGCACAAACGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCACGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGCTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATTGATGATCCAAGTAGTTTGGCAGGACAACTGGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCTAAGAAGTGGATTCTGTAGTAAAGCTGGGGCATCAAATTAA 1959 0.4211 MTENKSTSKITKKQETKKVSSFSHQPPRKQPRKGENPTRLIPPPDQSSDFGHSNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGGDSCGLSCHIECALQHEKVGVIDHGQLMQLDGGYCCASCGKVTGILGCWKKQLTIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIASGIQKLCSLAIEKADRWLATVPYVNPDSTEGSLPAACKFVFEEVTTSSAKIILIEMSNICSEEIKGYKLWYYKSQDESPTKDPISMFPKSQRRILVSNLKPCTEYTFRIISYTDTRDLGHSEAKCFTQSIEIVKNNPSSSVAMNKEKENLLTRGNSSVSKIGPNATTEGYGFKVRDLGKFLRLAWAQEQGYLEEFCCANVKNCCGQSEMVDKPRIPEAQLPSLSRVLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLVRSHGSGDSQTWTHGPTGEVSAVDSRIDMCRKRIASTNEETHDCDSTLINGSPLRISDGSRSLDENFEYCVKVIRWLECEAHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRLRSGFCSKAGASN* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0336 652 ProSiteProfiles Fibronectin type-III domain profile. 258 357 IPR003961 GO:0005515
Gso8g0336 652 MobiDBLite consensus disorder prediction 1 19 - -
Gso8g0336 652 Pfam PHD - plant homeodomain finger protein 58 177 IPR032881 -
Gso8g0336 652 Gene3D Immunoglobulins 247 348 IPR013783 -
Gso8g0336 652 SUPERFAMILY Fibronectin type III 264 340 IPR036116 GO:0005515
Gso8g0336 652 PANTHER VIN3-LIKE PROTEIN 1 4 647 - -
Gso8g0336 652 Pfam Fibronectin type III domain 264 340 IPR003961 GO:0005515
Gso8g0336 652 MobiDBLite consensus disorder prediction 1 49 - -
Gso8g0336 652 CDD PHD_VIN3_plant 78 143 - -
Gso8g0336 652 CDD FN3 288 339 IPR003961 GO:0005515
Gso8g0336 652 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 647 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0336 Gso-Chr8 3159265 3169097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0336 54 643 PHD Gene Family AT3G24440 48.007 5.02e-180 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0336 - - gmx:100815645 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0336 8 3159265 3169097 Gso8g0336 8 3159265 3169097 ECH
Gso5g1978 5 42905949 42917551 Gso8g0336 8 3159265 3169097 GST
Gso8g0336 8 3159265 3169097 Gso7g0767 7 8408198 8416686 PCT
Gso8g0336 8 3159265 3169097 Gso9g1544 9 39689430 39697872 PCT
Gso7g0767 7 8408198 8416686 Gso8g0336 8 3159265 3169097 PCT
Gso9g1544 9 39689430 39697872 Gso8g0336 8 3159265 3169097 PCT