Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0334 ATGGCAAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACACCAAATCGAAGATGCATTAACTGTAACAGCTTGGGACCACAATATGTTTGCTCAAATTTCTGGACGTTTGTTTGCATTAACTGTAGCGGAATACACCGAGAATTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGCACAGGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCACAGGAAATCTATCTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGACAAGCTCCGGGACTTTATTAAGAATGTTTATGTGGATAGAAGATTCAGCGGTGAGAGGACCTATGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCCACGAAAACATGAGAACAAAAACGTATCAGGGAAGCCCTTCATATGAGGACACACATGAACGTCGTTACAGTGACAGGTCTAGTCCTAGTGGAAGAAGTCCCGGATATGATCAAGAAAACAGGCAATATGGTGATTACAAAAAAAGCCCTGTTCGTCCTCCAATAATCAATGATTGGCGTCGAGAAGATAGATTTGGGGATGGACGGAAATTTGAAGATCATAGAATATCTGATGGAAATCATAATGTGGAAAGAGCTTCTCCTGAGCGAGCCAAGGATCTGGATTCTTCCAGCCCACCTGTGGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACAGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCAATGGAACCCCTGCAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCTTCAGCAGCTCCTCAAGCCCAGCAAACTACTGTGGCTCAACATGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATGTTGCTCCCGAGGCAAAAGCACCTCAGGGTCCTTCGAATGTAAATCCACTTGAATCCATGCTGACACAATTGTCAGTACCAGTATCTTTACCTTCTCATGTTTCAGGAGCCCAAGGACTTGTGATGGGATCAGCTCTTACCGCTACTGCTGCAGGAACACCAATTATTAGCAGCTTCTCAACATTCCCAGCCAGTGGTGCTTCAGTAACATCTTTTGGATTAACACCAGCATCAACTCACAATAATGCAGGACAGTGGGCTACTTTGCAGTATCAGCAACAACAACCTTTGTTCACTGCTGCTGCTAGTCAGCCTACTATTCAACAATCCACATCACCAGTTGGTGGAGCTTTGAATAATCAGCCCTGGACTGTACCACTGGTACAAGGGAACCCAAGCACACCAATGCCTCATACATCACACCTCGTCCCAAAGCCTGCCAATGAGGCTAAATCCCGTGTTGTTTTACAACCTTCTACAGCAGACATAAAACCAAGTGGAAGAAGTGAGCTTCCAGAGGATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGTGGTGCCCATGCCAAATTATGCACAACCTTCAAAATCAACAAATCCATTTGATGTCAGTAACGAACCAACTCCAGTTCAAGCCTCAACATTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAACACCTTCAGCTACAATGCACCCGTCAAACATGGGTAATATATCTCATGCTTGGAATCCACCCTCATCATCATCTTATGTATCGCCTCCTCAAGTACAAACTCTTGCACCAGCAATGGGACCAGGGGCATACATGGGACAACAAATGGCAACTAACATGCCAATGCCAAGGCATCAAGGAATTGGGAGTTTTGCTACTGAGGCAACTGCTTTTGGGTTCTCAAATCCAGATCAACAGCTGACTGGTAGGTTGTCAACTGCTGCTACCCCAAACCCCTACCATGCAGGAGGGAACCCTTTCGGATGA 2091 0.4467 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCSNFWTFVCINCSGIHREFTHRVKSVSMAKFSAQEVSALQEGGNQRAQEIYLKEWDPQRHSLPDSSNVDKLRDFIKNVYVDRRFSGERTYDKPPRVKGDKDDFHENMRTKTYQGSPSYEDTHERRYSDRSSPSGRSPGYDQENRQYGDYKKSPVRPPIINDWRREDRFGDGRKFEDHRISDGNHNVERASPERAKDLDSSSPPVVRPVREILGENVVPLRISEPPKTNSGQAANGSALTQRTASSSSLASSNGTPAEVKLETIKSLIDFDDDPEPPVASAAPQAQQTTVAQHGMPANSNDNNWASFDVAPEAKAPQGPSNVNPLESMLTQLSVPVSLPSHVSGAQGLVMGSALTATAAGTPIISSFSTFPASGASVTSFGLTPASTHNNAGQWATLQYQQQQPLFTAAASQPTIQQSTSPVGGALNNQPWTVPLVQGNPSTPMPHTSHLVPKPANEAKSRVVLQPSTADIKPSGRSELPEDLFTVKYSPFPAPVPGWQMGPPPSMGISIQYNNVVPMPNYAQPSKSTNPFDVSNEPTPVQASTFPSMSSLQGALPSVTPSATMHPSNMGNISHAWNPPSSSSYVSPPQVQTLAPAMGPGAYMGQQMATNMPMPRHQGIGSFATEATAFGFSNPDQQLTGRLSTAATPNPYHAGGNPFG* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0334 696 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Gso8g0334 696 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Gso8g0334 696 MobiDBLite consensus disorder prediction 306 342 - -
Gso8g0334 696 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Gso8g0334 696 CDD ArfGap_AGFG 12 122 - -
Gso8g0334 696 MobiDBLite consensus disorder prediction 318 342 - -
Gso8g0334 696 PANTHER ARF GTPASE ACTIVATOR 1 696 - -
Gso8g0334 696 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gso8g0334 696 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gso8g0334 696 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gso8g0334 696 MobiDBLite consensus disorder prediction 124 146 - -
Gso8g0334 696 PANTHER ARFGAP/RECO-RELATED 1 696 IPR044820 GO:0005096
Gso8g0334 696 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Gso8g0334 696 MobiDBLite consensus disorder prediction 260 294 - -
Gso8g0334 696 MobiDBLite consensus disorder prediction 124 294 - -
Gso8g0334 696 MobiDBLite consensus disorder prediction 195 233 - -
Gso8g0334 696 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0334 Gso-Chr8 3133633 3142431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0334 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 1.14e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0334 - - gmx:100815114 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0334 8 3133633 3142431 Gso8g0334 8 3133633 3142431 ECH
Gso5g1976 5 42877790 42885153 Gso8g0334 8 3133633 3142431 GST