Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0321 ATGCCTTCTCTCTCCGTTTTCCCATCACTCCCATCGCTTCAAAACCCTAACTTGAGCCAACCCAATTTCTTCAATTTCCGCTTACCGTCGCTCTGTCACCGTCCCCTCGTCAAAAGCACTGCAACTTTTCACCGTAGAATCCTCTGCAAAGCCTTCAGAGATTCCGGCGAGGACATCAAGGCGGTGCTCAAGTCCGACGACGGTGGTGGCAGCGGCGACGGCGGCGGCGACGGTGGGGGTGGGGGTGACCGGGATGCGGAGAAGAAAGAAGGGCCCTTGCCGGAATGGTTGAATTTCAGTTCTGATGACGCAAAAACGGTGCTTGTGGCTCTGGCAATTTCGCTTGCGTTTCGAACGTTCGTGGCGGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCTGAGAAGGTTTCATACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCGGTGCTTCAAGAAGTTGGATATAGCGATGATGATGTTTTTATAAAGCGTGTGGTTGCAAAGGCAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGAGTACATCCTTGAACCACCTGCTTATGAGATGAAACCCACACGTGTGCCAGAGAACTACGTCTTTGTAATGGGAGACAACCGCAATAACAGCTATGACTCCCATGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCAGTATTTCGCTATTGGCCACCAAATAGAATTGCTGGCACAGTTTCTAAGGAAACTTGCAGTGTTGAAACCACGCAGACGCAGGAGAGTGCGGAGACTGCTCTACCATCTCAATGA 882 0.4921 MPSLSVFPSLPSLQNPNLSQPNFFNFRLPSLCHRPLVKSTATFHRRILCKAFRDSGEDIKAVLKSDDGGGSGDGGGDGGGGGDRDAEKKEGPLPEWLNFSSDDAKTVLVALAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKAGDIVEVRKGHLVVNGVERNEEYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSKETCSVETTQTQESAETALPSQ* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0321 293 MobiDBLite consensus disorder prediction 63 92 - -
Gso8g0321 293 PANTHER SIGNAL PEPTIDASE I 87 273 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso8g0321 293 SUPERFAMILY LexA/Signal peptidase 118 267 IPR036286 -
Gso8g0321 293 PRINTS Bacterial leader peptidase 1 (S26A) family signature 120 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso8g0321 293 PRINTS Bacterial leader peptidase 1 (S26A) family signature 179 191 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso8g0321 293 PRINTS Bacterial leader peptidase 1 (S26A) family signature 223 242 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso8g0321 293 ProSitePatterns Signal peptidases I serine active site. 129 136 IPR019756 GO:0004252|GO:0016021
Gso8g0321 293 Gene3D Umud Fragment, subunit A 117 277 - -
Gso8g0321 293 ProSitePatterns Signal peptidases I signature 3. 228 241 IPR019758 GO:0004252|GO:0016021
Gso8g0321 293 TIGRFAM sigpep_I_bact: signal peptidase I 105 263 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso8g0321 293 CDD S26_SPase_I 123 255 IPR019533 GO:0004252|GO:0006465
Gso8g0321 293 Pfam Signal peptidase, peptidase S26 104 261 IPR019533 GO:0004252|GO:0006465
Gso8g0321 293 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 87 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0321 Gso-Chr8 3012697 3015302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0321 132 262 MADS-box Gene Family AT1G29960 31.061 1.51e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0321 K03100 - gmx:100815810 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0321 8 3012697 3015302 Gso8g0321 8 3012697 3015302 ECH
Gso5g1962 5 42752385 42755835 Gso8g0321 8 3012697 3015302 GST