Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0315 ATGGGGGAAGGTGAAGCTGAGGGGAGTGATGGCGCTCCCAAGAATGTTGTGGCAAACGACGTCGTTGCCAATGCGCTGTTGCCGTTCGATGTTCCCGCCAAGAAGTTAGCGCGGCAGCTCGATTTCACCGGCTTCGGCGGGATGTCGACGACGCCGCAGCCGCAGCCGCCGGTGGTTTTGCCGCTGCGGCCTTCTACTTCTGTCAGGGTTGGGAAACCAGAATCTCCTAAATCAAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACCCCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAACTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTAAATTGTTGTAACAATGTGGAAAACGAAGCTGCTAGACGAGAAGCAGTTGAAGCTACTTTAGAACGGAATCCAAATGCATTTAGGCCAAAAATAGCAAGTAGCCCTCATAGAACACGTGATATCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCATAATAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTATTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACTTGGTGTATATTCAGCAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCTTCACCACCAATATCAAAGAAAAGAAAAGGTCAAGAACTCTTATTTGGGCCAACCGTCAAGGATCCATCAGTTGGCAGGCAGGGGCAACAGGCAAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCACCTATCCCAGGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCGTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAAGCTAATGTTGACAAAGCTATGGCTGATGATGATTGTTCGAGTGCAAACCAGACAGATAATATCAGCCTGGATAATTCTTGTTCAGATGGTGCTGATGCCCCAAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCCCTGTTGGATCAAGGGCACATGCTTGCAACACATCTTTGCAACCGCCTTATGGGCAAGTAATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAAACAAAGTGCTCTTCATTAGCCAGAAGTGAATTAGAGAGTCAAAAGGGCCCAAACATGAATTGCAGTGGAAATGACAGTACTGAGACAGCACATCAGCAGGCAGCCACTAATAATAACATTAACGGTGTTGCCAAAGCTGCGGCGGGCAACTCCATTTTGTTCCCTGGTAGTGGTAGTTCCTGA 1656 0.4523 MGEGEAEGSDGAPKNVVANDVVANALLPFDVPAKKLARQLDFTGFGGMSTTPQPQPPVVLPLRPSTSVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCCNNVENEAARREAVEATLERNPNAFRPKIASSPHRTRDIREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNLVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGPTVKDPSVGRQGQQANNVRVPAPSSSLSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDQTETSRASSTQEQLPSQKEANVDKAMADDDCSSANQTDNISLDNSCSDGADAPKGRPMSPGTLALMCDEQDTMFMTAASPVGSRAHACNTSLQPPYGQVMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKGPNMNCSGNDSTETAHQQAATNNNINGVAKAAAGNSILFPGSGSS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0315 551 MobiDBLite consensus disorder prediction 277 294 - -
Gso8g0315 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 94 129 IPR005172 -
Gso8g0315 551 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 180 214 IPR005172 -
Gso8g0315 551 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 63 517 - -
Gso8g0315 551 MobiDBLite consensus disorder prediction 365 379 - -
Gso8g0315 551 MobiDBLite consensus disorder prediction 270 305 - -
Gso8g0315 551 SMART CXC_2 92 132 IPR033467 -
Gso8g0315 551 SMART CXC_2 177 218 IPR033467 -
Gso8g0315 551 MobiDBLite consensus disorder prediction 500 519 - -
Gso8g0315 551 MobiDBLite consensus disorder prediction 391 407 - -
Gso8g0315 551 MobiDBLite consensus disorder prediction 43 85 - -
Gso8g0315 551 MobiDBLite consensus disorder prediction 351 418 - -
Gso8g0315 551 ProSiteProfiles CRC domain profile. 93 217 IPR005172 -
Gso8g0315 551 PANTHER TESMIN/TSO1-RELATED 63 517 IPR028307 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0315 Gso-Chr8 2974453 2980584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0315 31 503 CPP Transcription Factor Family AT4G29000 56.597 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gso8g0315 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0315 - - gmx:100777327 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0315 8 2974453 2980584 Gso8g0315 8 2974453 2980584 ECH
Gso5g1957 5 42699055 42705543 Gso8g0315 8 2974453 2980584 GST