Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0314 ATGGATCCTCCACCGAAGAGCTGGAGCATCCACACCCGATCCGAGATCATAGCAAAATACGAGGTCATGGAGCGGGTCGGGTCGGGAGCATACGCCGATGTGTACCGCGGCCGCCGCCTCTCCGACAACCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAGTCCGCCTTCCGAGAAATCGACGCTTTGCAGCTCCTGCAGGGCTCCCCAAACGTCGTCGTTTTGCACGAGTACTTCTGGCGCGAAGACGAGGACGCCGTCCTTGTCCTCGAGTTCCTCAGAACCGACTTGGCCACCGTCGTCGCCGACGCCGCTAAGGCCAACCAGCCCCTCCCCGCCGGCGAGCTCAAGCGCTGGATGATTCAGATTCTCTCCGGCCTCGACGCTTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCTAATCTCTTAATTTCCGAACTCGGCCTCCTCAAGATCGCTGATTTTGGACAGGCAAGGATTCTCACGGAGCCTGGTATTGATGCTTCTAATAATCATGAAGAATATTCTAGGGTTTTAGATGACGCTGACAATAAGGATACTATTACTAGCACTCACGATGGGAAAGCAACATGCACCACAAGTGGCGTAGATAGGGAAGAGGAAGAGAAAGAACTTGGTTGTTTGACGTCATGCGTGGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATCTTTGCAGAACTTTTAACTCTGCAACCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTTAGTAGAATCATTGGTGTTTTGGGTAGCCTTGATGAGAGTGCTTGGGCTGGTTGTTCTAAACTTCCTGATTATGCGATAATCTCCTTTAGCAAGGTGGAGAATCCTGCTGGTCTTGAAGCTTGTTTGCCCAATCGGTCCCCTGATGAAGTGGCTCTGGTGAAAAAACTGGTTTGTTATGATCCTGCTAAGAGGGCCACGGCGATGGAGCTGCTTCATGACAAGTACTTTAGTGAAGAGCCTCTTCCTGTTCCGGTTTCTGAGCTGCGAGTTCCTATGACCAGAAAAGGGCAAGATGAGGATTCCCCTTGTGGGTGGGGTGATATCGATGAAATGGATTGCGATTCTGATTTTGATGAGTTTGGCCCTCTGAATATCACAAGGACTGGAACTGGTTTCTCCATACAGTTTCCTTGA 1230 0.5106 MDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDNLTVALKEIHDYQSAFREIDALQLLQGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVVADAAKANQPLPAGELKRWMIQILSGLDACHRHMVLHRDLKPSNLLISELGLLKIADFGQARILTEPGIDASNNHEEYSRVLDDADNKDTITSTHDGKATCTTSGVDREEEEKELGCLTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIIGVLGSLDESAWAGCSKLPDYAIISFSKVENPAGLEACLPNRSPDEVALVKKLVCYDPAKRATAMELLHDKYFSEEPLPVPVSELRVPMTRKGQDEDSPCGWGDIDEMDCDSDFDEFGPLNITRTGTGFSIQFP* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0314 409 PANTHER CYCLIN-DEPENDENT KINASE 10 12 364 - -
Gso8g0314 409 SMART serkin_6 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0314 409 Gene3D Transferase(Phosphotransferase) domain 1 106 359 - -
Gso8g0314 409 Pfam Protein kinase domain 20 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0314 409 Pfam Protein kinase domain 214 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0314 409 SUPERFAMILY Protein kinase-like (PK-like) 13 354 IPR011009 -
Gso8g0314 409 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gso8g0314 409 PANTHER CELL DIVISION PROTEIN KINASE 12 364 - -
Gso8g0314 409 ProSiteProfiles Protein kinase domain profile. 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0314 409 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
Gso8g0314 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0314 Gso-Chr8 2968492 2972139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0314 4 409 Core Cell Cycle Gene Families AT4G28980 57.263 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gso8g0314 Pkinase 2.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0314 - - gmx:100801952 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0314 8 2968492 2972139 Gso8g0314 8 2968492 2972139 ECH
Gso5g1956 5 42693102 42694931 Gso8g0314 8 2968492 2972139 GST
Gso8g0314 8 2968492 2972139 Gso7g0726 7 7887661 7890643 PCT
Gso8g0314 8 2968492 2972139 Gso9g1584 9 40146503 40148375 PCT
Gso7g0726 7 7887661 7890643 Gso8g0314 8 2968492 2972139 PCT
Gso9g1584 9 40146503 40148375 Gso8g0314 8 2968492 2972139 PCT