Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0312 ATGACCACCGTAACGGTCACCACTCGAGCTCAAATCCTCCGCCACACCGCCGCATTCACCTCCTCCGTCCTCTCGCAATCCGAACTACGTCGCCGCCTCATCGCCACTCTCCTCCGCGACACTCCATTCTCCGACCAAAAACACCTAAACCTCGCCGCAGACACTCTTGAGAGCGCGATCTCGTTCTCGAGCCCCGCCCTCCGCTTCTCGTCCCTCTCCCTCGCCGAGAAGCTCCTCCTCCCTCTCCCCGACTTCCCCCTCTCCTCTCTTCTCCTCTCTCTCATCCACGCACTCCGTAACCGCCCTACCGAATCCGCCGTTAGCCTCCTCCGAATCTTCCACTCCAACGCTTCCCTCGCTCGATCCGAAATCGCTCCCGCGCTCTACGAACGCCTCTTCTCTCTCCACCTCTTCCCCGTCTTCCGCTGGTTCGATGATCAGAGGACGCGGATTCTCTCAACGAGCCGTAACGATAGCGATTATTCGGTAACTTCCGAGGAGTACTCCGTGGTGCTGCCATGCGCGAAGGTGTTGTCGAAGATGAGCGAGGAGCAGGCAGCGAAGCTCAGGGAGGTGGAGAGAGACTACGAAGAGGTCCTCAACCAGAACTGCATGGTTCTCGCCGAGTATTTCAAAGAGGTTTTGGTCAACGAAAACGGTGACGCTGCTGCGATTAGTCCACCGTCGTTGGTACTGAAGAGCGCCGCAGAAGATGGCCGCGGCGGTGTGGAGAACAGAAAGGAGGAGATGATGAAAATGAGCGTGTTGGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTATTGAATTTTTGAGCCCCAGTTCCAGCAGCAGATCTTCCCAAGTGCCATTTTATCCTCAAAGAGTCTTTTCCAGAATCCTCAAACCCCAAAAAGCTTCAAAAACTTGGACAACACCAGTCTATTTAAACTCAACCACCGCTGATACTGATTTTTCTTTAGATGAGAGTTTGCTTAGTTCGTCTTCAGATTCTGAGGCAGAAAATGATGAGGAAAAGGACAAAACTGTTGCATTGTTGGAGCCTCGACAAAGCCAAATTAAGGAGCGAATGCTATCCATCTTCAAACAATCAAGAGGTTCCCCAGATTATCCTATGGCAGACTTCGATACCCCGCTGCATGGAATTGGGAAACATGCACCTCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTTAATAGAGGAAACATAACCTGTCCCATCACACGCCAGAAGCTTCAAAACACCCAGCTACCCAAAACAAATTACGTGCTCAAGCGACTAATTGCAAGCTGGAAAGATCGCAACCCCCATTTGGTCCCACCGCCGTGTGAGAGTCCGTACGAAGATACTGATGAGGCAGTTGTGATACCAACAACATTGCCTTCAACTTCTCCTAATAGTGTTATAACCCAAGCCACCGTTGATGGGATGATGAGTGAGTTACGCTGTGCAATCAATAACCTTTATATGTCAGAGGTTCTCCAGGAATCGGAAATGGCCGTGCTTCAAATTGACAAGTTCTGGAGAGGAGTGAATGTAGGAGTGGATATACATAGCATGCTATCAAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTTCAAGCTTCAGTTTTCCTTTTGGCGGAGATGGGTTCCAGAGACAATGCTGTTATTAAGACTCTCACACGTGTGGACACTGACGTGGAATGTATCAAGGCTCTTTTCAAGAACGGGTTGACTGAGGCTGTTGTCTTGTTGTATCTGCTAAACCCTTCCACTATGAGTCTTGCAGAGATGGCAATAGTGGAGTCTCTAATAACAGTTTTCAATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTGAAGCCCAAAACAGCTGCAGTGCTTTTACTTGCACGGATTGTTGGAAGCAGTGAAGAGATAATTGCATCTTCGGTTGTCAATACCCTTTTCTCTGAAAAAACAATTGGAACTATTGTCGGAAGTTTGGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATCTTGTTGAGATGCATGGAAGAAGATGGGACTTGCAGGAATAACATTGCTGATAAAGCAGAGTTGTCACCTATTTTGGAAACTTTAATCGGTGCAACCGATGGAGATCGATTTAAGATTATTCAGTTTTTCTTTGAGTTAGTCAAATTAAATAGGCGTACATTCATTGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTTATTTGCAGACAGCTCTTCAAGATCAATGTCCAGTTATGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCGATGGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCTGATACAATTATTTCACTGCAAGGGAGTTTTGACTTCTCTGGAAACCCTCGAACAAGAGAAGTTCTTCTTAAACGAGCAGGTATCGAAAAAAGTTCCAGAAGTCTTGTACAGGTGGATCAGATCAACAACTTCAGCCCAGAAATTGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGCACTCTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAACCCAGAACTACGATCAGCATGCTTTATATTAGCTACATGGCTCATTTACATGTTGACCATTCTACCAGATACAGGGATACATGTAGCAGCTCGTGCCTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTGTGCTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGCTTTGGTGATCTAACTTCCTTCACTAAGGATATCATAAAAGGGTTGAGAGAGCTAAAGAGATCCTGTCCTTTAGCAACTAAAATGCTAAAGGTTCTTGTTGAAGAAAATGAATCTAAAGCGGAAATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAGAATGGAGAGGTGCTGTCTGTCATTTGCTTTAAGGGTAAATTTTTTTCAGGACATACAGATGGCACTATGAAGGTCTGGACATTAAAGGATAACTTATTCTGTCTGATGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGGTGATTTCCGAATCTGATGACAGATTATACAGTGGTTCACTTGACCGAACTGCAAGGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTGCAGGTGCATGATATGAAAGACCAGATTCATAATTTAGTTGTAACCAATAGCTTATCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTTCATGGGAAATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTTGGGAAAGCAAATCCTATTCATGCACTGCAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGATGGATCCGCTATAAAGATATGGAACAATTCCAATTACAGTATAGTTGGATCATTGCAAACTGGATCTGATGTGCGGGCCATGGAAGTGAGCTCAGAATTGATTTATTTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAACACAAAAGAGTCGACACGTTGCAAATGGGTACGAATTGTAGGGTTAATTGCATGGCTCTAGACAGCAATGAAGAGGTTTTGGTAATTGGAACTTCAGATGGACAGATTCAGGCTTGGGGAATGAATTAA 4002 0.4463 MTTVTVTTRAQILRHTAAFTSSVLSQSELRRRLIATLLRDTPFSDQKHLNLAADTLESAISFSSPALRFSSLSLAEKLLLPLPDFPLSSLLLSLIHALRNRPTESAVSLLRIFHSNASLARSEIAPALYERLFSLHLFPVFRWFDDQRTRILSTSRNDSDYSVTSEEYSVVLPCAKVLSKMSEEQAAKLREVERDYEEVLNQNCMVLAEYFKEVLVNENGDAAAISPPSLVLKSAAEDGRGGVENRKEEMMKMSVLENGRYNPIWSEREASIEFLSPSSSSRSSQVPFYPQRVFSRILKPQKASKTWTTPVYLNSTTADTDFSLDESLLSSSSDSEAENDEEKDKTVALLEPRQSQIKERMLSIFKQSRGSPDYPMADFDTPLHGIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNITCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPPCESPYEDTDEAVVIPTTLPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIDKFWRGVNVGVDIHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEMGSRDNAVIKTLTRVDTDVECIKALFKNGLTEAVVLLYLLNPSTMSLAEMAIVESLITVFNKKEEDLVKMCLKPKTAAVLLLARIVGSSEEIIASSVVNTLFSEKTIGTIVGSLGADLAKERIAAVEILLRCMEEDGTCRNNIADKAELSPILETLIGATDGDRFKIIQFFFELVKLNRRTFIEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPVTQLAAADTIISLQGSFDFSGNPRTREVLLKRAGIEKSSRSLVQVDQINNFSPEIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGMKSRNPELRSACFILATWLIYMLTILPDTGIHVAARACLLKQFIAKLNCAKDVEDRILSMLALNSFLHFSDGFGDLTSFTKDIIKGLRELKRSCPLATKMLKVLVEENESKAEIWIHKELIKEDCSENGEVLSVICFKGKFFSGHTDGTMKVWTLKDNLFCLMQEIQEHTKAVTNLVISESDDRLYSGSLDRTARVWSIGKAAIHCVQVHDMKDQIHNLVVTNSLSCFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLGKANPIHALQIHGELIYAAGSSLDGSAIKIWNNSNYSIVGSLQTGSDVRAMEVSSELIYLGCKGGTVEIWDKKKHKRVDTLQMGTNCRVNCMALDSNEEVLVIGTSDGQIQAWGMN* 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0312 1333 CDD RING-Ubox_PUB 395 437 IPR045210 -
Gso8g0312 1333 MobiDBLite consensus disorder prediction 326 345 - -
Gso8g0312 1333 SUPERFAMILY RING/U-box 390 467 - -
Gso8g0312 1333 Coils Coil 182 202 - -
Gso8g0312 1333 Pfam WD domain, G-beta repeat 1087 1122 IPR001680 GO:0005515
Gso8g0312 1333 Gene3D - 1043 1149 IPR015943 GO:0005515
Gso8g0312 1333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1299 1333 - -
Gso8g0312 1333 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1332 - -
Gso8g0312 1333 ProSiteProfiles U-box domain profile. 390 465 IPR003613 GO:0004842|GO:0016567
Gso8g0312 1333 Gene3D - 1150 1333 IPR015943 GO:0005515
Gso8g0312 1333 ProSiteProfiles Trp-Asp (WD) repeats profile. 1090 1123 IPR001680 GO:0005515
Gso8g0312 1333 SUPERFAMILY WD40 repeat-like 1064 1332 IPR036322 GO:0005515
Gso8g0312 1333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 466 IPR013083 -
Gso8g0312 1333 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1332 - -
Gso8g0312 1333 Coils Coil 695 715 - -
Gso8g0312 1333 ProSiteProfiles Trp-Asp (WD) repeats profile. 1299 1333 IPR001680 GO:0005515
Gso8g0312 1333 SMART Ubox_2 394 458 IPR003613 GO:0004842|GO:0016567
Gso8g0312 1333 SMART WD40_4 1083 1122 IPR001680 GO:0005515
Gso8g0312 1333 SMART WD40_4 1252 1288 IPR001680 GO:0005515
Gso8g0312 1333 SMART WD40_4 1291 1331 IPR001680 GO:0005515
Gso8g0312 1333 SMART WD40_4 1157 1200 IPR001680 GO:0005515
Gso8g0312 1333 SMART WD40_4 1041 1078 IPR001680 GO:0005515
Gso8g0312 1333 SMART WD40_4 1209 1249 IPR001680 GO:0005515
Gso8g0312 1333 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1090 1123 - -
Gso8g0312 1333 Pfam U-box domain 392 462 IPR003613 GO:0004842|GO:0016567
Gso8g0312 1333 SUPERFAMILY ARM repeat 37 1023 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0312 Gso-Chr8 2953541 2961085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0312 392 490 U-box Gene Family AT5G42340 42.157 1.75e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0312 - - gmx:100808867 2529.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0312 8 2953541 2961085 Gso8g0312 8 2953541 2961085 ECH
Gso5g1953 5 42663988 42671670 Gso8g0312 8 2953541 2961085 GST