Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0311 ATGAATAGAGGTGTTTTGCAAAGCTCACCGGTGCAACAAATGATGGCCAGAAACCCTAACAACTGGTGGAACATCAACACCATGCGCCCTCCTCCTCCTTCTCAAGCTTCTGCACCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCTTATAACCCCACTTCTCTTCCTCTTCCTTCTTGGCATGACAACAATCAAGAGCTACCCGAGTCATGGAGCCAGCTACTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGGTATGTGCCAGATTCAGTCAAAGAAGTTGGAGAACTGGGAGCAACAAATGCTAAGCCAGGCTCCAAGTGCTCCTATTGTTGATGTTAAGCAAGAAAGCTCGGTGAACAGCTATGTGTATGGGCATGGAACAAACGAAGAGTTTCAAGCAGCAAAGCCAATTACATGGTCTCAAATAGTGCCTGCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCCAACAATAACGCCGATGCGAGGCCTCCTCCACCAGATCCATCCTCAGAGTGTAATAGCAGTACTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGTCATTAATGTTTATTCTCCTCGCTCTGTCGATTTTTGCAAACGACCACGAGAGTCAGTGAATAGTGATGGCACGCTAGATGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCACCAACAATCCGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTAGTAGTGAGCAGGATTCTCAAGAAGAAGCAAATAAAGACCTGAGGAGTAGAGGGTTGTGCCTGGTTCCAGTGTCATGTACGCTCCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCTCCTGCTTTTGGTGGGGGATTTCGGTAG 1125 0.4684 MNRGVLQSSPVQQMMARNPNNWWNINTMRPPPPSQASAPFFSTPSNFLTPYNPTSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGGMCQIQSKKLENWEQQMLSQAPSAPIVDVKQESSVNSYVYGHGTNEEFQAAKPITWSQIVPASSPKSCVTSFSSSMLDFSNNNADARPPPPDPSSECNSSTATGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEVINVYSPRSVDFCKRPRESVNSDGTLDALSLPYLGSGSGNMRHQQSVQGEKNCIFPEDPGQLLNENCLKRKAASSEQDSQEEANKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0311 374 PANTHER OS05G0228400 PROTEIN 17 360 - -
Gso8g0311 374 Coils Coil 323 343 - -
Gso8g0311 374 MobiDBLite consensus disorder prediction 167 206 - -
Gso8g0311 374 Gene3D - 207 258 IPR036638 GO:0046983
Gso8g0311 374 MobiDBLite consensus disorder prediction 183 206 - -
Gso8g0311 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Gso8g0311 374 CDD bHLH_AtbHLH_like 207 254 IPR045239 -
Gso8g0311 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 360 - -
Gso8g0311 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 254 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0311 Gso-Chr8 2939768 2943723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0311 1 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.264 7.03e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0311 - - gsj:114421158 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0311 8 2939768 2943723 Gso8g0311 8 2939768 2943723 ECH
Gso5g1952 5 42650084 42654023 Gso8g0311 8 2939768 2943723 GST