Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0309 ATGTTAGCACTTCCCTGTCTTCTTTTTTTTTTATATATAATTTTTTTTAGCTCCCTTAAATGTAATTGGCCAACACTACATAACAGAGCAAAGAGAAAAGCTTCCTTCAATGTAGTTGTGATTCTTCAATACCATATATTCTCTTTCTCTTTCTTGATTTGTGTTGTGAAACAGTTAAAAGTGGTCTTGATGTCTGAGGCATTGGAAGAGGTTGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTGCCAGGGTGTGAGTCACCAGAGAGGGAGGGTGTGTTTAAGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGGAAACTGGAATGGTGGAGGATCTGAAAAAGATGCCGCTGCCTTGTTTTCTCCAACTTCAAGGGGTGCTGTTAGTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACACTCTCCAAAACCATTACATGAGAATAAGCCCCAGATTTCTGCTCCAGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCAGAAGAATGATGCTGCTGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCATATGGGGTTTCTAGTCGGGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCTACTAG 1074 0.4404 MLALPCLLFFLYIIFFSSLKCNWPTLHNRAKRKASFNVVVILQYHIFSFSFLICVVKQLKVVLMSEALEEVVPSMKGGCEEEGLNLKATELRLGLPGCESPEREGVFKSVVVSGAKRGFSDAIDGNWNGGGSEKDAAALFSPTSRGAVSVSVSAAKSLTLTATDCTNQPTALGASVLKETVPHSPKPLHENKPQISAPAAKAQVVGWPPIRSFRKNSMASQPQKNDAAADAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRY* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0309 357 Pfam AUX/IAA family 89 348 IPR033389 -
Gso8g0309 357 Gene3D - 231 350 - -
Gso8g0309 357 ProSiteProfiles PB1 domain profile. 237 339 IPR000270 GO:0005515
Gso8g0309 357 PANTHER AUXIN-INDUCED PROTEIN 65 350 - -
Gso8g0309 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 350 IPR003311 GO:0005634|GO:0006355
Gso8g0309 357 SUPERFAMILY CAD & PB1 domains 235 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0309 Gso-Chr8 2891192 2894181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0309 240 347 B3 DNA Binding Superfamily AT4G23980 29.630 2.06e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso8g0309 AUX_IAA 2.1e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0309 K14484 - gmx:100795749 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0309 8 2891192 2894181 Gso8g0309 8 2891192 2894181 ECH
Gso5g1950 5 42608448 42611446 Gso8g0309 8 2891192 2894181 GST
Gso8g0309 8 2891192 2894181 Gso9g1589 9 40184456 40187981 PCT
Gso9g1589 9 40184456 40187981 Gso8g0309 8 2891192 2894181 PCT