Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0298 ATGGCTGAGCTACCTAGCTCAGAAGCATCGTCATCATCCGCTTCCAGTCGGAAGCACTCGTCTTCGGAGGCCCATTTACCCGCCCCGGATCAGAAAAGGCCCAAGCAGGCCCGAGATAGCAGCAGCAAGCACCCCGTCTTCAGAGGGGTCCGAATGCGGGCCTGGGGAAAGTGGGTATCCGAAATACGCGAGCCCAGAAAGAAGAACCGGATCTGGCTCGGAACCTTTGCCACCGCCGAGATGGCCGCACGTGCGCACGACGTGGCGGCGCTCGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCAGAACTCGCGGCCTCCCTTCCCCGACCCGACTCCAACTCGCCAAGAGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAGGTTAACGATGTTCCGACGACGCCTTCGTCGTCGTCGGCGTCTCTGTCGCTATCGCAATCGTCATCTTGGTCTTCATTGGCGGTTTCTTCTTCCTCCGGCGATGGCCCGTCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCGAGTCTGGGGACGAGTTTCGAAATACCCGACCCGAGTGGGGAGTTGGTGTATTTGGACCCGTGGCCGTATTCTCAGGCGTGGAGTCACGGCATTTATGATGAGAGTGAGGGGTATTTTATTGGGGACTCTGAGACTGAGAGCATGATACTTTGTGGCTTCGAGGGTTCATTGTGGCAGCATTAA 723 0.592 MAELPSSEASSSSASSRKHSSSEAHLPAPDQKRPKQARDSSSKHPVFRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELAASLPRPDSNSPRDVQAAAAKAAAMEVNDVPTTPSSSSASLSLSQSSSWSSLAVSSSSGDGPSTPEELGEIVELPSLGTSFEIPDPSGELVYLDPWPYSQAWSHGIYDESEGYFIGDSETESMILCGFEGSLWQH* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0298 240 MobiDBLite consensus disorder prediction 23 46 - -
Gso8g0298 240 MobiDBLite consensus disorder prediction 1 46 - -
Gso8g0298 240 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Gso8g0298 240 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 10 239 - -
Gso8g0298 240 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Gso8g0298 240 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Gso8g0298 240 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Gso8g0298 240 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Gso8g0298 240 MobiDBLite consensus disorder prediction 1 22 - -
Gso8g0298 240 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Gso8g0298 240 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Gso8g0298 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 239 - -
Gso8g0298 240 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0298 Gso-Chr8 2793630 2795001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0298 4 211 AP2-EREBP Transcription Factor Family AT5G11590 52.941 8.71e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g0298 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0298 K09286 - gmx:100778201 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0298 8 2793630 2795001 Gso8g0298 8 2793630 2795001 ECH
Gso5g1940 5 42538695 42539704 Gso8g0298 8 2793630 2795001 GST
Gso8g0298 8 2793630 2795001 Gso9g1604 9 40331491 40333082 PCT
Gso9g1604 9 40331491 40333082 Gso8g0298 8 2793630 2795001 PCT