Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0291 ATGGTTCGTCGTAAGATTGAGATTACGGAGTTGAAGGACTCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGAACAGGTTTGTTCAAAAAAGCAAATGAATTATCTATTTTGTGTGGAGCTGAAGTTGCTGTTGTTGTGTTCTCTCCTGGGAATAACCCTTATTCTTTTGGGCATCCAAGCGTTGATGTTGTTGCAGACAAGTTTCTTAAACAAGAGCCGAAATCAAATGATGTCCAGGGAACATCTACTGAGGTTGCTGATATGGATAGGCTCAATCAACAACTATCCGATGTTCAAAATGAAATACTTGAGGAACAAAAGAAGGCTGCAGAACTCAATGAGAGAATGAAACAAAAAGGAGTCACACAACTTTTTCAACCTAAAGAATTGCAAGGTTCAAATTTAGAGATCCAAAAGATGAAGGACTGTTATGATGCAATCGAGGTGTCAGAATATATGTTGCTCCTTGCAAAAGAACCAGTAGTTGGAATACCCAAACAGGTTGCTACTAAGAAAAGAAGAGGGAATTAA 534 0.3876 MVRRKIEITELKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAVVVFSPGNNPYSFGHPSVDVVADKFLKQEPKSNDVQGTSTEVADMDRLNQQLSDVQNEILEEQKKAAELNERMKQKGVTQLFQPKELQGSNLEIQKMKDCYDAIEVSEYMLLLAKEPVVGIPKQVATKKRRGN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0291 177 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Gso8g0291 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso8g0291 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gso8g0291 177 PANTHER MADS BOX PROTEIN 2 169 - -
Gso8g0291 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g0291 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g0291 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso8g0291 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g0291 177 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Gso8g0291 177 Coils Coil 89 116 - -
Gso8g0291 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0291 Gso-Chr8 2727364 2728129 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0291 1 117 Type I MADS-box Gene Family AT3G66656 45.238 1.61e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso8g0291 SRF-TF 3.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0291 - - gmx:100803542 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1934 5 42469533 42470487 Gso8g0291 8 2727364 2728129 GST