Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0289 ATGGGTCATCGTAAGATTGAAATTGCGATAGTGAAGGATCCTAACATGAGGCAAGTCACGTTTTCTAAGCGTCGAACGGGACCATTCAAAAAGGCTAATGAACTATCCATCTTGTGTGACGTAGAAATTGCTATTGTTGTGTTCTCCATTGGAAATAAGCCTTACTCTTTTGGGCACCCATGTGTTGATGTTGTTGCGACCAAGTTTCTTCAACTTCAACAAGCGGCTAATTCAAGCAATGCCAAACAAATTGATGCCCAAGGCCGAAACAACCCATCTAATGAACTTGGTGGCATGGATAGGCTGAATCAATAA 315 0.419 MGHRKIEIAIVKDPNMRQVTFSKRRTGPFKKANELSILCDVEIAIVVFSIGNKPYSFGHPCVDVVATKFLQLQQAANSSNAKQIDAQGRNNPSNELGGMDRLNQ* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0289 104 MobiDBLite consensus disorder prediction 78 104 - -
Gso8g0289 104 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Gso8g0289 104 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso8g0289 104 PANTHER MADS BOX PROTEIN 2 104 - -
Gso8g0289 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gso8g0289 104 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso8g0289 104 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso8g0289 104 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso8g0289 104 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso8g0289 104 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 104 - -
Gso8g0289 104 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0289 Gso-Chr8 2721549 2721863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0289 1 83 Type I MADS-box Gene Family AT2G34440 53.012 3.70e-28 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso8g0289 SRF-TF 9.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0289 - - gmx:102669022 210.69