Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0280 ATGTCAAATTTGCATTTTATTTTCTATGGTTTAGTAGTTATTCTTTTTCTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCGGCCTAAGCCAGGGAATGGTTTATCCACCAACATGACCAGAGTCGAATTTTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTAGGTGGCCTCAAACATTCTGTCTTTAGGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCATGGTAAGGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTGCATGCAGGGGTTTACACGGAGAAAGTTAATATTTCTCCTTTCAAATCCTTCGTAACAATACAAGGAGAAGGTGCAGATAAGACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATAGCCAAGAACATCACATTCAAAAACACTGCCCCAATTCCAGCACCAGGAGCAGTTGGAAAGCAGGGAGTGGCATTGAGAATTTCAGCAGACACAGCAGTATTCCTAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATATTGGTAGGCATTACTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCCTTAACAGCGCAAGGAAGGAACAGTTTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCAGTGATGAGGAAGCTAAGCCTTTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATCTCTCTCTTTGA 1128 0.4335 MSNLHFIFYGLVVILFLQNPSATQCHTKGIRPKPGNGLSTNMTRVEFSEQQFMKWVKFVGGLKHSVFRTAKNKLFPSHTLHVSKKHGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNISPFKSFVTIQGEGADKTIVQWGDTAQSQPLGTYGSATFAVNSPYFIAKNITFKNTAPIPAPGAVGKQGVALRISADTAVFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELSDEEAKPFISLSYIDGSEWINLSL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0280 375 Gene3D - 77 374 IPR012334 -
Gso8g0280 375 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Gso8g0280 375 PANTHER PECTINESTERASE 1 374 - -
Gso8g0280 375 Pfam Pectinesterase 84 367 IPR000070 GO:0030599|GO:0042545
Gso8g0280 375 SUPERFAMILY Pectin lyase-like 76 373 IPR011050 -
Gso8g0280 375 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0280 Gso-Chr8 2641655 2644818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0280 85 374 Carbohydrate Esterase AT1G05310 47.651 2.45e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0280 K01051 - gmx:100802832 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0280 8 2641655 2644818 Gso8g0280 8 2641655 2644818 ECH
Gso5g1925 5 42386406 42389986 Gso8g0280 8 2641655 2644818 GST