Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0272 ATGGTGAATGAACAAAGAGCCCATTTATGTCTTCAATGTAGAAACTTGATTTGGACAAGCTCAAGAGCATTCCATCAGTGTCTTGAGCTCCAAATGGAGAACACCTGGATCCTGACTTTTCACCTTCTCCTCCTCCTGCTCCATCCAAATGCAGCAAAAGGGGCCATTGGTGTTGGTGTTGGTGTTGGTGGCAGAGGTGGCATAGGTGTTGGCATTGGCATTGGGGGCAGTGTTAACACCCCAGGGCCCTCTGGATCAAACCTCAAGAGTGCCTTCACAGCACTCCAGGCATGGAAATCTGCCATGACCGATGACCCATTGAAGATTCTGGATACTTGGGTTGGTCCCAATGTGTGTTCCTACAGAGGTGTCTTCTGTGCAAACTCTCAGGATGATAATGGAATTGTCACAACAGCAGCAACTGAGTCTTCTATTGTTGCAGGAATAGATCTCAACCATGCAAACCTCCAAGGGACCCTTGTCAAAGATCTCTCTTTGCTCTCTGACATCACTCTTTTCCATCTCAACAGTAACAGGTTTTCTGGCTCACTCCCTGACACATTCAGGGACCTCACTTCACTCCAAGAGTTGGACCTCAGCAACAACCAGCTCTCAGGCCCTTTCCCCATGGTCACTCTCTCCATGCCAAGCCTCATCTACTTGGACCTCAGATTCAACAACTTCTCAGGCCAACTTCCTGATCAACTCTTCAACAAGAAACTTGATGCTATATTCCTCAACAACAACAACTTTGGAGGTGAAATTCCAGACAGTTTGGGAAATTCACCTGCCTCAGTCATCAACTTGGCCAACAACAAGTTGAGTGGAAGCATCCCTTTCAGCTTTGGCTTCATGGGTTCAGGACTGAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCACAAGGAGTAGGGATCTTCACTGAGATGCAAGTTTTTGATGTGAGCTTCAACTCACTCATGGGCCATTTGCCTGACACTATGAGTTGCTTGCAAGACATAGAGGTTCTTAATTTGGCACATAACAAGCTTTCTGGGGAGTTATCCGATGTGGTATGCTCTTTGAGAAGCCTATTAAATCTAACTGTTGCTTACAACTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAGTGTGGGGTTTGATTTCTCGGATAATTGTATTCCTGGAAGGGATATGCAAAGACCCCAACCGGACTGCTCTATAATCCCTGGTGGTAGTCTCAATTGTCTTAGAATTCCTACTCCAAAACCTCTTGTTTGCGCTGCTCTGGCTGCAACTTTGTCTAAGCACACAAATTCACGTTCCTTTTCTCCCTGA 1335 0.4614 MVNEQRAHLCLQCRNLIWTSSRAFHQCLELQMENTWILTFHLLLLLLHPNAAKGAIGVGVGVGGRGGIGVGIGIGGSVNTPGPSGSNLKSAFTALQAWKSAMTDDPLKILDTWVGPNVCSYRGVFCANSQDDNGIVTTAATESSIVAGIDLNHANLQGTLVKDLSLLSDITLFHLNSNRFSGSLPDTFRDLTSLQELDLSNNQLSGPFPMVTLSMPSLIYLDLRFNNFSGQLPDQLFNKKLDAIFLNNNNFGGEIPDSLGNSPASVINLANNKLSGSIPFSFGFMGSGLKEILFLNNQLTGCIPQGVGIFTEMQVFDVSFNSLMGHLPDTMSCLQDIEVLNLAHNKLSGELSDVVCSLRSLLNLTVAYNFFSGLSQECSRLFSVGFDFSDNCIPGRDMQRPQPDCSIIPGGSLNCLRIPTPKPLVCAALAATLSKHTNSRSFSP* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0272 444 Gene3D Ribonuclease Inhibitor 265 400 IPR032675 -
Gso8g0272 444 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 444 - -
Gso8g0272 444 PANTHER LRR/EXTENSIN 31 444 - -
Gso8g0272 444 ProSiteProfiles Leucine-rich repeat profile. 193 214 IPR001611 GO:0005515
Gso8g0272 444 Pfam Leucine rich repeat 173 228 IPR001611 GO:0005515
Gso8g0272 444 SMART LRR_typ_2 215 239 IPR003591 -
Gso8g0272 444 SMART LRR_typ_2 191 214 IPR003591 -
Gso8g0272 444 SMART LRR_typ_2 358 381 IPR003591 -
Gso8g0272 444 SMART LRR_typ_2 167 190 IPR003591 -
Gso8g0272 444 Gene3D Ribonuclease Inhibitor 90 264 IPR032675 -
Gso8g0272 444 Pfam Leucine rich repeat N-terminal domain 90 126 IPR013210 -
Gso8g0272 444 PRINTS Leucine-rich repeat signature 194 207 - -
Gso8g0272 444 PRINTS Leucine-rich repeat signature 334 347 - -
Gso8g0272 444 SUPERFAMILY L domain-like 118 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0272 Gso-Chr8 2583558 2585312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0272 81 415 Leucine-rich Repeat extension Gene Families AT3G22800 49.405 8.72e-105 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0272 - - gmx:100820611 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0272 8 2583558 2585312 Gso8g0272 8 2583558 2585312 ECH
Gso5g1917 5 42337200 42338786 Gso8g0272 8 2583558 2585312 GST