Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0270 ATGAACAAGATCGGCAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAACTGTGTGGATCCAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGCTAGGTCTACCAGCGGGAGTAAAGTTTGATCCAACAGACCAAGAACTCATAGAACACCTTGAAGCCAAAGTAGAGGCAAAGAATATGAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCATCAAAGGCATACACAACAGGAACGCGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGGGGGGAAACCCGGTGGCACAAGACAGGTAAGACAAGACCAGTGATGGTGAATGGCAAACAAAAGGGTTGCAAGAAGATTCTAGTCCTCTACACCAACTTCGGCAAGAACAGAAAACCTGAAAAGACCAACTGGGTGATGCACCAGTACCATCTGGGTCAGTACGAGGAAGAGAGAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTACCAGACACAACCGAGGCAATGCAATTGGTCAGATAGAAGTGCCACAACCGGTGAAGGAAGTGGAGAACAACAATCTAACAACAACAACAACAATAATGGAAGAAGAGACAGTGGAAGTGGGACTTGTTCTTCTTCTAAGGAAATTAATGTTACTCACAGAGATGAAATGTCTGCTGTTGTTGGGGTCCCTCCCATAACAACCTTCAACACTGCCTTGGATATTCAACAACTAAAATCCGACCATTTTGGCTTCATCCCATTCAGAAAAGGCTTCGATGAGGTTGGAATAGGAGAAGCTTGCACAGCAAGAGAAGTGCAAGCATCAGGGTCATGCGATGAAGTGCATGAACGGCATGCAGTACATCATCATCAACAACAACAGCAAAATCAGCATGCGCAGCAACAAATTGCAACCACAGCCTCCCATATCAGTAGGCCTTCGCTTCCAATCTCCACCATCATCTCTCCTCCACCCCTTCACCATGCATCCATCATCCTAGACGACAACTCGTACCATGTCTCCAGAATAATGCTCCAAAATGAAAATTTCCAGCAACAGCAGCAACAACATTATAAACTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGATATCAAAGCGGAGTCATCTATTGCAAACCCACAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGCCAACATGCAGGATCATCGTGAGTAG 1356 0.458 MNKIGNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQYEEEREGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEQQSNNNNNNNGRRDSGSGTCSSSKEINVTHRDEMSAVVGVPPITTFNTALDIQQLKSDHFGFIPFRKGFDEVGIGEACTAREVQASGSCDEVHERHAVHHHQQQQQNQHAQQQIATTASHISRPSLPISTIISPPPLHHASIILDDNSYHVSRIMLQNENFQQQQQQHYKLGGRSASGLEELIMGCTSTDIKAESSIANPQAEWLKYSSYWPDPANMQDHRE* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0270 451 MobiDBLite consensus disorder prediction 328 347 - -
Gso8g0270 451 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Gso8g0270 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 5 430 - -
Gso8g0270 451 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 430 IPR044799 GO:0003700
Gso8g0270 451 MobiDBLite consensus disorder prediction 216 253 - -
Gso8g0270 451 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Gso8g0270 451 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Gso8g0270 451 MobiDBLite consensus disorder prediction 332 347 - -
Gso8g0270 451 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0270 Gso-Chr8 2560847 2566359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0270 14 440 NAC Transcription Factor Family AT5G56620 53.829 4.17e-137 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g0270 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0270 - - gmx:100799291 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0270 8 2560847 2566359 Gso8g0270 8 2560847 2566359 ECH
Gso5g1915 5 42315986 42321364 Gso8g0270 8 2560847 2566359 GST