Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0265 ATGATGTTGGGGGAGACCCACCGCGCAAATCCAACCGTACACGTGCCACCGTGGACGCCGGAGATCTTCTCACCGTACACCGGCAATGCCGATTACTCTCCGTACTCATTGCAAGAAGCACTGAGTGCGCTTCAGCACTACGAATCCACCGATGCTGAGTCAGACTCGGAGTTTCCGTCTCGGGAACCGGAAGTCCCGGTGGACGCTTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACCGAGTGTCCGTACGCCCACCCCGGGGAGAAGGCTCGCCGCCGTGATCCCCGGAAGTACCATTACTCCGGCACGGCGTGCCCCGATTTCCGCAAGGGGAGTTGCAAGAAGGGTGACGCGTGCGAGTACGCGCATGGGGTTTTCGAGTGCTGGCTCCACCCCGCGCGTTACCGTACTCAGCCCTGCAAGGACGGCACCAGTTGTCGCCGGCGCGTGTGTTTCTTCGCGCACACGCCGGAGCAACTCAGGGTGTTGCCACAGCAGAGTCCGCGGAGTGCTGATTCATACGACGGGTCTCCTTTGAGGCATGCAATTGAGTCTTCGTGCGCCAAGACTCTGGCACCGGCACCGTTTGTGTCTTCTCCTGGGTCGGTGTCGCCGCCTCTGGAGTCTCCGCCGATGTCGCCGATGACTGTGAGTGTTAATGAGATGGTGGCGTCTTTAAGGAACTTGCAACTGGGGAAGGTGAAGTCTTTGCCTTCTTCTTGGAATGTCATGGGGCCTTCCGGGTTCGGATCTCCGAGAGGACCCATGATCCGACCCGGATTCTTCAGCCTTCCGACAACCCCGACCCAGGCTCCGACTCGCGGTGGGGTCAACTACTTTGACAAGTGGGATCAGAGTTGCGAGGAGGAGCCTGTTATGGAGAGGGTGGAGTCTGGACGAAACATAAGGGCGAGGATGTTTGCAAAATTGAGCAAAGAGAATCATCTGGACGGGTCGGATTCTGGATCGGGTCAAATTGGGGATCCGGATGTTGGATGGGTTTCGGAGCTTGTCAGTCGCTGA 1068 0.5843 MMLGETHRANPTVHVPPWTPEIFSPYTGNADYSPYSLQEALSALQHYESTDAESDSEFPSREPEVPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSADSYDGSPLRHAIESSCAKTLAPAPFVSSPGSVSPPLESPPMSPMTVSVNEMVASLRNLQLGKVKSLPSSWNVMGPSGFGSPRGPMIRPGFFSLPTTPTQAPTRGGVNYFDKWDQSCEEEPVMERVESGRNIRARMFAKLSKENHLDGSDSGSGQIGDPDVGWVSELVSR* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0265 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Gso8g0265 355 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Gso8g0265 355 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 353 - -
Gso8g0265 355 PANTHER UNKEMPT FAMILY MEMBER 7 353 IPR045234 -
Gso8g0265 355 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Gso8g0265 355 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Gso8g0265 355 Gene3D - 115 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0265 Gso-Chr8 2492864 2494384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0265 54 229 C2H2 Transcription Factor Family AT5G12850 54.255 2.52e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso8g0265 zf-CCCH 7.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0265 - - gmx:100808676 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0265 8 2492864 2494384 Gso8g0265 8 2492864 2494384 ECH
Gso5g1909 5 42253978 42255481 Gso8g0265 8 2492864 2494384 GST