Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0250 ATGGGGAGGAAGTGCTCACATTGTGGAACCATAGGCCATAACTCAAGGACCTGCACATCTTTGAGAGGGGCTACTACTAGTTTCGTTGGACTTCGCCTCTTCGGCGTGCAATTAGACAGTACTAATTGTGTTAGCATCAAGAAAAGCTTTAGCATGGACTCCTTACCCTCATCATCATCTTCCTCATTCTCTTCATCAAGACTAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGGTATCTCTCAGATGGTCTCTTAGCTCGAGCCCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAGGGTGACTGGAGGGGAATCTCTAGAAACTTTGTGACTACAAGAACCCCAACACAAGTGGCAAGCCATGCTCAAAAGTACTTTCTTCGATTGGCAACTATAGACAAGAAAAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGTAGCAACAAAGCAGGTTCTAATTCAGTTTCGGCTCATCAAAAGGATGAGTCTAAATGTGAAGTTAAGAATAATGATGCTGCCACTTTGTCTTTGCTAGGGCGTATAACTTACTTTCAACAAGAAAACAAATCATCAGAGTATAAGCAAGAAACATTTGATAATTGCTCATATCAAAGTCAACCAGGTGAAGAGCATCAAGTCGCAGTTCTTAATCTGGATCTCACTCTTGCAGCCCCCAAGGCAAAGACCCTGCAGGAACAAAATAAGTCATCTCCTTCTGCTCCATTTCTGCTTGGGCCAATTAGCGTGACTTAA 804 0.4316 MGRKCSHCGTIGHNSRTCTSLRGATTSFVGLRLFGVQLDSTNCVSIKKSFSMDSLPSSSSSSFSSSRLTIDENSDRTSFGYLSDGLLARAQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATIDKKKRRSSLFDLVGSNKAGSNSVSAHQKDESKCEVKNNDAATLSLLGRITYFQQENKSSEYKQETFDNCSYQSQPGEEHQVAVLNLDLTLAAPKAKTLQEQNKSSPSAPFLLGPISVT* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0250 267 SMART sant 95 145 IPR001005 -
Gso8g0250 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Gso8g0250 267 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Gso8g0250 267 MobiDBLite consensus disorder prediction 246 260 - -
Gso8g0250 267 MobiDBLite consensus disorder prediction 246 267 - -
Gso8g0250 267 Gene3D - 97 149 - -
Gso8g0250 267 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Gso8g0250 267 CDD SANT 98 143 IPR001005 -
Gso8g0250 267 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 259 - -
Gso8g0250 267 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Gso8g0250 267 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Gso8g0250 267 PANTHER TRANSCRIPTION FACTOR KUA1 1 259 - -
Gso8g0250 267 SUPERFAMILY Homeodomain-like 92 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0250 Gso-Chr8 2368017 2369688 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso8g0250 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0250 - - gmx:778052 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0250 8 2368017 2369688 Gso8g0250 8 2368017 2369688 ECH
Gso5g1893 5 42124841 42126392 Gso8g0250 8 2368017 2369688 GST