Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0236 ATGATCACGCAACCACCAGACGCTGCCCCCGCCGTCGCACCCAACTCCGGCGAAGGAGGAGAGAAGAAAAGCATAAACGCTGAGCTCTGGCAAGCTTGTGCGGGGCCGCTTCTCAACCTGCCTTCGCCTGGAACTCACGTCGTTTACTTCCCTCAAGGCCACAGCGAACAGGTCGCAGCGTCTTTGAAGAAAGACGTGGATGCTCAGGTCCCGAACTATACCAATCTCCCCTCCAAGATACCCTGTCTTCTTCACAATGTCACACTTCATGCAGATCCAGACACGGATGAAGTATATGCTCAGATGGCACTTCGGCCGGTTCCTTCTTTTGATACGGATGCGTTGTTAAGATCGGATATTTCTCTCAAGTTGAGTAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACGGCAAGTGACACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAAAAGATTTTCCCCCCTCTTGATTACTCTTTGCAATCTCCTGTTCAAGAACTCGTGGCCCGGGATTTGCATGATAATGTTTGGAGATTCCGCCATATATATCGTGGAAAACCAAAACGTCACTTGCTTACAACTGGATGGAGTCTATTTATCAGTGGAAAAAGGCTTTTAGCGGGAGACTCTGTTTTGTTTGTAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATAAGACGAGCTAACAGGCAACCCTCCAATTTATCATCTTCGGTACTATCAAGTGATAGTATGCACATTGGAGTTCTGGCTGCTGCTGCTCAAGCTGTTGCAAACAATAGTCCCTTCACCGTGTTCTATAATCCTAGGGCTAGTCCTTCAGAATTCGTTATTCCTTTAGCCAAGTACTACAAAGCAGTGTATAGCCACCATATATCACCTGGTATGCACTTCCGAATGACGTTTGAAACTGAAGACTCAGGAACAAGAAGATATATGGGTACAATCATAGGTGTCAGTGATCTGGATTCTGTGAGATGGAAAAATTCACTATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGAGGATAGGCGTAGTAGGGTCTCAGTCTGGGAAATTGAACCCGTGACTACTCCATATTTCATCTGCCCACCTCCTTTCTTCAGATCCAAGAGACCTAGACTACTGGGAATGCCAGATGATGAGCCGGATTTCAACAACCTTTTCAAGAGTACAGTTCCTTGGCTTGGTGATGATATGTGCATAAAGGATCCCCAAGCTCTCCCTGGCTTGAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTGCTCTTGCTAGCTCATTGCAGCCAAATTGTGTGCCTTCCATGTCTGGATTGGTTCTGCAAAATCTTCCTGGTGCAGATATTGCAAATCAGCTGGGGTTTTCTACCTCACAAACCTCTCAATCAAACAATGTATCTGTCAATGCTCAGAATATACTTCAGACTTCCCAGCAACTTGATCACATTCAGAAGCTACCATGCCCATCCAGTGCATTGGGAGCAGTTACACAGCTGCCGCAGCAGTTGGCTGATATCACTCAACAACCAAGGAACTTGACAAATCAAACTTTACCACAGAATGAAGCTCACACCCAACTTCTGAATTCCCAGAGAGTTGTCCAAACTAACAATATTCTTCAACAGCAACAATCGTCCATTCAAAACCATCAACTGCTTAGAAGCCTGTCTCAGAACCCACCTCAGAAGGATCAACAAACTACATTCGGTCAGAATGAACGGCAAAATGTGTTTCAATCCCCTATGCCTGATCATTTTAATCAACAGTTACAGATGTCTGACAATCAGGTTCGGTTTCAGTTGTTACAGAAGCTTCAGCAGCAACAACAGACACTCTTGGCACAGCAGTCTGCATTGCAGCAGCCTGCTCTAATTCAAGTTCAAGACCAGCAAAGGCAGCTTTTAGATGTAACAAATAACTCTAGTTCCTTAATTTCTGGTCAAGTACTGGAAAATCCTCCTACACTTCAAAACTCACTCCCTGAGGCTAATTCTGTCACCCATCAGATAACAATGCCTAGTAGCCAGAAAAATTTTCATTACTCTCATCTATCTCAGCAACCTGCCTTGCTGTCTGAAATGTCTGGCCATGCTGGACTTCTCCCTACAGTTACAACCAATCCACTTTCTGCTTCTGGTGGAAGTATACTGACTGGTGCAGGGCAATCAGTAATTACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACCGTGCCAGTGCACTTCCCCCAGTGGTAAGTTCCCAGATCCATAGGAGCACAACAATAGGGGATGATATGGCTCAGTCTGCTGTCACAATCTCGGGTCCAAGTACCCTAGAAACCTTGTCATCTAATGCAAACATGGTAAAAGATGTACGGCCGAAGTATGAAGTAAAGCCTTCTTCAAATATTTCAAAAAATCAGAATCATGGAAATGTTGCCCGTCAGATGTACTTGAATGGCGTTGTCCAGACAGACTATTTGGATTCATCATCTTCTACAACATCACTTTACCATTTTCAGAGTGATACTCATATGCATCAGAATAACAACCCATTTTCTTACAATCCACAGTTGATTTATTGTAGAGACAATAGTCAAAATGTTGAAGTTCAGGCTGATGCTAGGAGCAATGTTCCGTTTGTCAATGACATTAATGGCCAAATGGGAATGCCATCGAATCTAGATTCTCTTTTAACCAATGGCACTGTGGGGCTGGGGAAGGATTTGTCAAATAATTTCTCTTCCGGAGGCTTGCTTGGAGACTTAGAAAATAACAAAGGTGTTCAGCCAGAACTTTCATCTTCAATGGTTTCACAGACATTTGAAGTTCCTGATATGAGTTTCAATTCAATTGATTCTACAATAGATGGTAGTAGCTTCTTGAATAGGGGTCCATGGGATCTGCCGCCACCACCTCCACCTCCTCCTCCTCCTCCTCCTCCACCACCACCACAACAACAACAGCAGATTCAGCGGATTAGAACATACACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATTGACATAACACGATATTCAGGTTACGAGGAGCTTAAACAGGATCTAGCTCTTAAGTTTGGTATTGAGGGACAGCTGGAGGATCGAGAAAGAATTGGTTGGAAACTTGTATATGTAGATCATGAGAATGATGTTTTGCTTGTGGGAGATGACCCTTGGGAGGAATTTGTTAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTTCAATATCCAGCAGGCAGCAGCTCTGGTGGTGGGAATGCTTAA 3342 0.4434 MITQPPDAAPAVAPNSGEGGEKKSINAELWQACAGPLLNLPSPGTHVVYFPQGHSEQVAASLKKDVDAQVPNYTNLPSKIPCLLHNVTLHADPDTDEVYAQMALRPVPSFDTDALLRSDISLKLSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSLQSPVQELVARDLHDNVWRFRHIYRGKPKRHLLTTGWSLFISGKRLLAGDSVLFVRDEKQQLLLGIRRANRQPSNLSSSVLSSDSMHIGVLAAAAQAVANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHHISPGMHFRMTFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQVGWDESTAEDRRSRVSVWEIEPVTTPYFICPPPFFRSKRPRLLGMPDDEPDFNNLFKSTVPWLGDDMCIKDPQALPGLSLVQWMNMQQNPALASSLQPNCVPSMSGLVLQNLPGADIANQLGFSTSQTSQSNNVSVNAQNILQTSQQLDHIQKLPCPSSALGAVTQLPQQLADITQQPRNLTNQTLPQNEAHTQLLNSQRVVQTNNILQQQQSSIQNHQLLRSLSQNPPQKDQQTTFGQNERQNVFQSPMPDHFNQQLQMSDNQVRFQLLQKLQQQQQTLLAQQSALQQPALIQVQDQQRQLLDVTNNSSSLISGQVLENPPTLQNSLPEANSVTHQITMPSSQKNFHYSHLSQQPALLSEMSGHAGLLPTVTTNPLSASGGSILTGAGQSVITDDVPSCSTSPSTNNRASALPPVVSSQIHRSTTIGDDMAQSAVTISGPSTLETLSSNANMVKDVRPKYEVKPSSNISKNQNHGNVARQMYLNGVVQTDYLDSSSSTTSLYHFQSDTHMHQNNNPFSYNPQLIYCRDNSQNVEVQADARSNVPFVNDINGQMGMPSNLDSLLTNGTVGLGKDLSNNFSSGGLLGDLENNKGVQPELSSSMVSQTFEVPDMSFNSIDSTIDGSSFLNRGPWDLPPPPPPPPPPPPPPPPQQQQQIQRIRTYTKVYKRGAVGRSIDITRYSGYEELKQDLALKFGIEGQLEDRERIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLQYPAGSSSGGGNA* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0236 1113 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Gso8g0236 1113 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso8g0236 1113 Pfam AUX/IAA family 998 1086 IPR033389 -
Gso8g0236 1113 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Gso8g0236 1113 SUPERFAMILY CAD & PB1 domains 1014 1079 - -
Gso8g0236 1113 MobiDBLite consensus disorder prediction 966 994 - -
Gso8g0236 1113 MobiDBLite consensus disorder prediction 972 994 - -
Gso8g0236 1113 PANTHER AUXIN RESPONSE FACTOR 16 1105 - -
Gso8g0236 1113 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1105 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso8g0236 1113 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Gso8g0236 1113 Gene3D - 130 233 IPR015300 -
Gso8g0236 1113 SMART B3_2 132 234 IPR003340 GO:0003677
Gso8g0236 1113 MobiDBLite consensus disorder prediction 737 758 - -
Gso8g0236 1113 MobiDBLite consensus disorder prediction 1 22 - -
Gso8g0236 1113 CDD B3_DNA 131 223 IPR003340 GO:0003677
Gso8g0236 1113 ProSiteProfiles PB1 domain profile. 1001 1085 IPR000270 GO:0005515
Gso8g0236 1113 Gene3D - 296 367 - -
Gso8g0236 1113 Gene3D - 996 1090 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0236 Gso-Chr8 2232417 2239658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0236 14 489 B3 DNA Binding Superfamily AT1G19220 66.597 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso8g0236 AUX_IAA 3.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0236 - - gmx:100791531 2088.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0236 8 2232417 2239658 Gso8g0236 8 2232417 2239658 ECH