Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0229 ATGGGGATTTGCTTCAGCATTGAAGACCCAAACAACCTCTCCATCTCCGATTCGAACGCCAAGCCTAATAAACCTGCAGGTCATGAATCTGGCGCTCCATTGGCTTCCATGAATATCAAAGATCTCCGCGAAGGTGCTGGATACAGCAATGTGGATATTTTCACGTACGAAGAGCTTAGGCTCGCGACGAAGCACTTTCGTCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATAGCGTGAGGTCGGGTTACATGTCCACTGAAGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGAGATAGAGAATGGCTCGCGGAAGTTAACTATTTAGGTCAATTCAGTCACCCAAATCTGGTGAAGCTCATTGGATATTCCTGTGAGGATGACCACCGGTTATTGGTGTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGACTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAATGCGAAGCTTTCGGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATACGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGTGATGTGTATGGTTTTGGGGTGGTGCTACTTGAAATGCTTATCGGTAGAAGAGCATTAGACAAGAGCAGGCCTAGCCGAGAGCACAACTTGGTTGAGTGGGCCCGTCCACTATTGAATCATAACAAAAAACTTTTGAAAATCCTAGACCCAAAACTAGAGGGGCAATATTCATGTAAAACTGCATTGAAGGTGGCCCATTTAGCATACCAGTGTCTTAGCCAAAACCCGAAAGGTAGACCGCTAATGAGCCAGGTTGTTGAAATTCTCGAAAACTTTCAGTCAAAGGGGGGGAATGAGGAAGATCAAATGCTTCAAACTGGCGGTACCAGCGTAACCCTTTATGAGGTTCCTAAGGGCAGCAATGACACTCCAACTTAG 1140 0.4588 MGICFSIEDPNNLSISDSNAKPNKPAGHESGAPLASMNIKDLREGAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYMSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYSCEDDHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSCKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGGNEEDQMLQTGGTSVTLYEVPKGSNDTPT* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0229 379 PANTHER OS01G0588500 PROTEIN-RELATED 26 376 - -
Gso8g0229 379 Pfam Protein kinase domain 71 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0229 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Gso8g0229 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 26 376 - -
Gso8g0229 379 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Gso8g0229 379 ProSiteProfiles Protein kinase domain profile. 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g0229 379 Gene3D Transferase(Phosphotransferase) domain 1 149 365 - -
Gso8g0229 379 Gene3D Phosphorylase Kinase; domain 1 42 148 - -
Gso8g0229 379 CDD STKc_IRAK 72 346 - -
Gso8g0229 379 SUPERFAMILY Protein kinase-like (PK-like) 48 344 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0229 Gso-Chr8 2177512 2182517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0229 54 343 Glycoside Hydrolase AT3G07070 52.218 2.04e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso8g0229 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0229 - - gmx:100819547 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0229 8 2177512 2182517 Gso8g0229 8 2177512 2182517 ECH
Gso5g1876 5 41946507 41952173 Gso8g0229 8 2177512 2182517 GST