Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0211 ATGGGTGTTCCACAACCTCCACCTCCCTCTCAACATCTCTATCCACAAGAAATTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATCATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCCTCTCTCTCATCACCACCTCTCCACATACTTCCCAGTACTTCTACTGATCCACAAACTGCATATCCTTATTCTACACAACCTTGCCGTTTAGATCTGACAGTGCAATTTCTGGACAAACTTCCTAGAATTTTATTTGATGAGGATTTAAGAACAAGAGATTCAGTATGTTGTGTTTGCCTAGGAGAATTTGAGCTGAATGAAGAGTTGCTACAGATTCCTTATTGCAACCATGTGTTTCATATAAGCTGCATATGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGCTCCATCATTCCCTCTTCCAAGTTCCTTAATCCAGCACCACCTATTATTATATCAGACCCACCACAGCAAGGTGGAATTTCAGGCTCTTCATCACACATCATGTCATTGCCTCATCAACAAGAAGAAGAAGTTGGTGCTTCCACAAATACTACCATTTTTCAAGGGAATGATGTATAA 630 0.4016 MGVPQPPPPSQHLYPQEIQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPSTSTDPQTAYPYSTQPCRLDLTVQFLDKLPRILFDEDLRTRDSVCCVCLGEFELNEELLQIPYCNHVFHISCICNWLQSNSTCPLCRCSIIPSSKFLNPAPPIIISDPPQQGGISGSSSHIMSLPHQQEEEVGASTNTTIFQGNDV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0211 209 SUPERFAMILY RING/U-box 86 157 - -
Gso8g0211 209 SMART ring_2 108 149 IPR001841 -
Gso8g0211 209 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 166 - -
Gso8g0211 209 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Gso8g0211 209 Pfam Ring finger domain 108 150 IPR001841 -
Gso8g0211 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 155 IPR013083 -
Gso8g0211 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 11 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0211 Gso-Chr8 1970167 1972156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0211 3 196 C3H Transcription Factor Family AT4G10150 34.951 2.25e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0211 K19039 - gmx:100806554 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1859 5 41768547 41770542 Gso8g0211 8 1970167 1972156 GST