Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0195 ATGGCTCCCTCAGCCATATTAGTATGTGGTTTTTGCATCTTCCTTTTCCATCTCCAAAGCACAAGAGGGAACAAACAGGTTAACTGCAACAGGTTGCGATGCGGCGATATAGATATTGAGTTCCCTTTCGGTTTGAGAGGATCCAACCAAGACCGTCGCTGCAGGTATTACCCAATTCAAAGCTTCCAACTTTCGTGTCTGGACCAAACACAAACCATTCTCACCCTCCCAGGCTTCGGTAACTTAACCGTGAAAAGCATCGATTACGAAACCCAAAGCATCCGAGTCAACGACCCAGCAGGGTGTCTCCCGAAACGGTTCTTACACAAGTGGAACCTTTCGGATGATTCACCTTTTGCTTTAAACCCATTGATTTATGGAACAATTCCGTTTAACCTCACTTTCCTACGATGCCCCTCCAACGTGACGGACTCGTCTCAATTCCCGTCAGTGCCAATTTCGTGCCTGAGCGATAAAAGCAACTACTCGACCATAGTTTCGTGGTCACAACCTATTATATCATCACCCTTGTTGTCTCAACAGTGCGAGGTCATGTTTCGGGCTCTTGTCCCTCTGCCGGTGTTGGACACGCCCATGTTGCCATTTTGGCCTGATCTCAACACCGACCTTGATTTGGTGTGGACCCAACCCAATTGTAGGGACTGTTCACTTAGTGGCCAACTTTGTGGCTTCTCCAAGGACAAAACTAAAACCCCTCAAGTTCGGTGTTTCGCTAGGGACTCCACCAAAGGTCTTTCAAGAAGTGGGAAATATGGGTTAGCAATAGGAGTGGGAATACCAGGAGTCTTGTGTCTAATTGGGATTTGTTGCTGTATCGGCGGCAAGCTGAGGATGCTAAGGCATGGTGGACGCAGCACAGATGTTCCGGTGAGAAGCGTCCCTTTGGAAATGGGGCTTGACGGAGCCACAATTGAAAAGTATCCCAAAACTCTTATTGGGGAGAGTGGACGCTTATTGAAGCCCAATGACAGCACCTGCGCAATATGCCTCTGTGAATATGAGGCCAAAGAAACCTTGAGGAGCATACCCCAATGTAACCATTATTATCACGCACATTGCATAGACCACTGGCTCAAATTGAATGCCACCTGTCCCTTGTGCAGGAATTCGCCCACAGCTTCTCTTTTTTCCTTCTCTCCCACTTCCTCATTGGCCTAG 1179 0.4801 MAPSAILVCGFCIFLFHLQSTRGNKQVNCNRLRCGDIDIEFPFGLRGSNQDRRCRYYPIQSFQLSCLDQTQTILTLPGFGNLTVKSIDYETQSIRVNDPAGCLPKRFLHKWNLSDDSPFALNPLIYGTIPFNLTFLRCPSNVTDSSQFPSVPISCLSDKSNYSTIVSWSQPIISSPLLSQQCEVMFRALVPLPVLDTPMLPFWPDLNTDLDLVWTQPNCRDCSLSGQLCGFSKDKTKTPQVRCFARDSTKGLSRSGKYGLAIGVGIPGVLCLIGICCCIGGKLRMLRHGGRSTDVPVRSVPLEMGLDGATIEKYPKTLIGESGRLLKPNDSTCAICLCEYEAKETLRSIPQCNHYYHAHCIDHWLKLNATCPLCRNSPTASLFSFSPTSSLA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0195 392 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 391 - -
Gso8g0195 392 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Gso8g0195 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 391 - -
Gso8g0195 392 SUPERFAMILY RING/U-box 325 378 - -
Gso8g0195 392 CDD RING-H2_PA-TM-RING 332 375 - -
Gso8g0195 392 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Gso8g0195 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 380 IPR013083 -
Gso8g0195 392 SMART ring_2 333 374 IPR001841 -
Gso8g0195 392 Pfam Ring finger domain 332 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0195 Gso-Chr8 1845958 1848323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0195 28 379 C3H Transcription Factor Family AT2G46495 34.734 8.39e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0195 - - gmx:102661206 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1843 5 41649054 41651837 Gso8g0195 8 1845958 1848323 GST