Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0178 ATGGCTTCATCTTCCATCAAACACACTCACCACCTTAACCGCACAAAACTCTTCATGAAAGAAGAAACCCTTTTGAAAAAGAAGCATCACTATCCCAAAATCATACGAATACGTGTCACCGACGCCGACGCTACCGACTCCTCCAGCGACGACGACGAGCCCTCCATGTCCTCCACGCGCCGCAGAGTAAAAAACTTCGTCAACGAAATTACCATCCAAGGCGGCGGCGGTGGTGGTGGCGACGTTAACGTTGTTTCTAAGAAAAGAAGATTCAAGTCCGGTGCCGGAGCTCCGTTATGTCGGCGGAAGACGGGGGCGAAGAAGTTCCGGGGAGTGAGGCAGCGGCCATGGGGGAAGTGGGCGGCGGAGATAAGAGACCCGTCGCGCCGCGTCCGGCTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCTGCCATTGTGTACGACAACGCGGCCATTCAGCTGCGTGGCGCCGACGCGCTCACCAATTTCATAACGCCGCCGCCGGAGAACAGAAAAACCGGTTACTGCTCCGGCGAGGAGTCTCGCAACAACCACGACTTGCGTTCCCCCACTTCGGTTCTTGGGCGCTGTTCGGTGTCCGAGGAAGCTGTAACTGCAAACGACGTATTTGGAGGCTCTAGTGAGTGCGAGTATTCATGCGTTTCGGAGTCAGTGTTTCCTATTCCTAACGAGGTGGTGTTTGACTTTGAAAGCACGTTAGATATGTTTGATGAAGGGATTAATAATGTTGTGGCAGAGACTAGTATATTCTTGGCGGAGGATTTAGATTTGGGTTTTACGAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 882 0.5272 MASSSIKHTHHLNRTKLFMKEETLLKKKHHYPKIIRIRVTDADATDSSSDDDEPSMSSTRRRVKNFVNEITIQGGGGGGGDVNVVSKKRRFKSGAGAPLCRRKTGAKKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFITPPPENRKTGYCSGEESRNNHDLRSPTSVLGRCSVSEEAVTANDVFGGSSECEYSCVSESVFPIPNEVVFDFESTLDMFDEGINNVVAETSIFLAEDLDLGFTSWHRECDNFQDIGGDLFVWDPLVAL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0178 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 289 - -
Gso8g0178 293 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Gso8g0178 293 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Gso8g0178 293 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 289 - -
Gso8g0178 293 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Gso8g0178 293 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Gso8g0178 293 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Gso8g0178 293 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Gso8g0178 293 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gso8g0178 293 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Gso8g0178 293 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0178 Gso-Chr8 1707209 1708778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0178 1 293 AP2-EREBP Transcription Factor Family AT4G23750 42.000 3.29e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso8g0178 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0178 - - gmx:100776453 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1820 5 41483140 41484897 Gso8g0178 8 1707209 1708778 GST
Gso11g0164 11 1352040 1353836 Gso8g0178 8 1707209 1708778 PCT