Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0152 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAGCTCATCAGATACATTACTACTCATGGATATGGCTGTTGGAGTGAAGTTCCAGAAAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGGAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCACGGGGTCGTAGGAAACAGATGGGCTCACATTGCAAGCCACTTGCCAGGTCGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAAATAAGAAAGACTTCTTCGGTGTCTTCAACAACCATTGCACAAAGTATCGATCACAATTCTTCTGACCAGTTCAATTACAATTCCAATCTAGTACTAGACCACTTTCCCAACCATGATAACAATCTACAAACAAAACCACCAGTTCAAGAAACCTTGTTTTCCTCAACATGCCCTCTGTTCATGTTTGACACTACTAGTTCACTAGAAGCTGGCACAGCAATAGACTGCAATAGTACTACTGTGCGAGCAGAACATTTTCAAGATGCTGTGGGTTTGAGCACTGAAACATGGAACTTGAGCCACCATCAGGTTCATGCACTTCCACCTCTCACAGTGAGTGTAGGTTTGGACACCACAAATTATTTGCCACCATTGATTGAGAACGTGGACAACATGGTCCCAATTGAGGTACAATCTTGTACCATGGATGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCGAGGCTTAAATGAATGGATGGTGGAGACGCAGCAACAATGTCCTAACTTTCTTTTTTGGGACAGTGTTGAAGGACAGCTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATATGCTTTCTCCTTTTCCTTCTTCTTTGTGTGGAAGTATTTGCAGAACTTTGTTTCCCAACCTCCATTGCCTCCGCTTCTACCTCGCTACCATGATCATTCCTGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATTTGGCGAAGCACCCTGAGATTGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTCTCGCGAGTATGTGAGGGAGACTTTTGCTTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATCGAGTTTCTCAGAACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACTTTGAAGAAACAGGCCAAGCCACCTGGCAGGCCCTTTGGCGGCCCATCCGGTGATCGCCCTAGGGGTCCACCACGCTTTGAAGGGGAGCGTAGGTTTGGTGGTGATCGTGATGGATACCGTGGAGGTCCCCGAGGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGGGTGCTGGTGGAAGGCCTGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTTCCCTAA 1572 0.4631 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSSVSSTTIAQSIDHNSSDQFNYNSNLVLDHFPNHDNNLQTKPPVQETLFSSTCPLFMFDTTSSLEAGTAIDCNSTTVRAEHFQDAVGLSTETWNLSHHQVHALPPLTVSVGLDTTNYLPPLIENVDNMVPIEVQSCTMDEQGDIALECLQRRGLNEWMVETQQQCPNFLFWDSVEGQLGGEELAPNSSNVEANMLSPFPSSLCGSICRTLFPNLHCLRFYLATMIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGGPGGDFGGDKGGAPADYRPSFGGAGGRPGFGRGSGGFGAPTSSNLP* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0152 523 MobiDBLite consensus disorder prediction 454 470 - -
Gso8g0152 523 Pfam Plectin/S10 domain 345 436 IPR005326 -
Gso8g0152 523 CDD SANT 69 112 IPR001005 -
Gso8g0152 523 Gene3D - 6 66 - -
Gso8g0152 523 PANTHER 40S RIBOSOMAL PROTEIN S10 262 522 IPR037447 -
Gso8g0152 523 CDD SANT 17 61 IPR001005 -
Gso8g0152 523 MobiDBLite consensus disorder prediction 433 523 - -
Gso8g0152 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso8g0152 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso8g0152 523 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso8g0152 523 Gene3D - 69 140 - -
Gso8g0152 523 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso8g0152 523 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso8g0152 523 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 262 522 - -
Gso8g0152 523 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso8g0152 523 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso8g0152 523 Gene3D - 343 446 IPR036388 -
Gso8g0152 523 SMART sant 13 63 IPR001005 -
Gso8g0152 523 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0152 Gso-Chr8 1423881 1431496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0152 1 305 MYB Transcription Factor Family AT1G63910 51.852 3.51e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g0152 S10_plectin 9e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0152 K09422 K02947 gmx:100803556 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1794 5 41201919 41213389 Gso8g0152 8 1423881 1431496 GST