Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0127 ATGGTGCCAGAGAACTTGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAACTACCCAACCCGGGGTGTTGAGCTGGGGGGAAGGGTATTACAATGGAGACATTAAGACTAGGAAAACAAGTCAAGGAGTAGAACTCAATTCTGACCAAATAGGGTTGCAGAGGAGTGAACAGCTGAGAGAACTATTCAAATCCCTCAAAACTGTAGAAGTCACCCCTCAAACCAAAAGGCCTTCAGCAGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGCAAAGGGTCAACCCATTTGGCTGAACAATGCCCATTCTTCTGATTGTAAAATTTTTAGCCGTTCTCTTCTGGCAAAGAGTGCATCCATTGAGACGGTTGTGTGCTTTCCGTTTAGGGAAGGGGTTATTGAGTTAGGTACTACTGAACAGGTCCCAGAAGATTTGAGTGTCATTGAACTGATCAAAACTTCTTTCTTGAATAGTCTGCATGCCAATGTTCCCAATAAGTCAGTAGCTACATTGAAATCAAGGAACCAGGAAGGTCTTTCTTATGCAGCATTTGATCATAATGACTATAATGTTAAATCAATTCCAGAAGTTGGGTATGAAATAGCCAACACAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCGCTAGATGAAACATTTATGATTGAAAGTATAACCAATGGCACTTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATATCACAAACTTTTGCCTGCCCTGAGAATATTGCTTCTGCCCCCAAGTCTAACAACCCTTCTGATCCTTGTGCCCGAAATTTTCAAAAGTGCAACAACCCAAAAATGACCTTAGTGGATCCTCGAAGTGATGATTTGCACTATCAGAGAGTTCTTTCTACCCTTATAAAAAGTTCTGACCAGTTACTTATGGGAATGCATTTGCAAAAATTTCCTCAGGAATCAAGCTTTGTTAGTTGGAGGAAAGAACAGCCAATGGATTGCAAATGGCCAAGAGCAGGAACGTCACAAAAGTTATTGAAGAAAGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTGCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGAGTAGAGGCTGATGAAAACGGCATGAACCATGTTATGTCAGAAAGGAGGAGGAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTAGATGATGCTATTGATTACCTTAAAAAGCTCGAGAGAAGGGTAAAAGAGTTGGAAGCTCACAGGGTGGTAACAGACATAGAGACTGGGACTAGAAGATCACCACAAGATACGGTGGAGAGGACTTCTGATCATTATTTTAGGAAAAATAATAATGGCAAGAAACCAGGGATGAAAAAGAGGAAGGCTTGTGGTGTAGATGAGACAGAAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATGTTACTGTGAGTACCAGTGACAATGAAATTGTGATCGAATTGAAGTGCCCCTCGAAAGCAGGAAGGCTGCTAGAAATTATGGAAGCAATCAACAGTTTCAATATAGATTTTAGTTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTCACAGGACCAAGTGTTGCAACAACCAAAAGAATCAAACAAGCACTCCAAAAATTGGCTTCCAAGTGCTGA 1893 0.4078 MVPENLKKQLALAVRSIHWSYAIFWTDSTTQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTVEVTPQTKRPSAAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGQPIWLNNAHSSDCKIFSRSLLAKSASIETVVCFPFREGVIELGTTEQVPEDLSVIELIKTSFLNSLHANVPNKSVATLKSRNQEGLSYAAFDHNDYNVKSIPEVGYEIANTTSPDGSSNAFQANQPLDETFMIESITNGTSQVQNWQVIDDELSNCVHNSMNSSDCISQTFACPENIASAPKSNNPSDPCARNFQKCNNPKMTLVDPRSDDLHYQRVLSTLIKSSDQLLMGMHLQKFPQESSFVSWRKEQPMDCKWPRAGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRVEADENGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIDYLKKLERRVKELEAHRVVTDIETGTRRSPQDTVERTSDHYFRKNNNGKKPGMKKRKACGVDETEKEINSDALKGSYANDVTVSTSDNEIVIELKCPSKAGRLLEIMEAINSFNIDFSSVQSTEADGNLYLTIKSVLTGPSVATTKRIKQALQKLASKC* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0127 630 Gene3D - 422 490 IPR036638 GO:0046983
Gso8g0127 630 Coils Coil 467 494 - -
Gso8g0127 630 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 190 IPR025610 -
Gso8g0127 630 ProSiteProfiles ACT domain profile. 562 630 IPR002912 -
Gso8g0127 630 PANTHER TRANSCRIPTION FACTOR TT8 3 625 - -
Gso8g0127 630 Pfam Helix-loop-helix DNA-binding domain 432 478 IPR011598 GO:0046983
Gso8g0127 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 428 477 IPR011598 GO:0046983
Gso8g0127 630 SMART finulus 434 483 IPR011598 GO:0046983
Gso8g0127 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 431 487 IPR036638 GO:0046983
Gso8g0127 630 PANTHER TRANSCRIPTION FACTOR EGL1 3 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0127 Gso-Chr8 1182354 1186553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0127 2 630 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.108 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g0127 bHLH-MYC_N 1.6e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0127 - - gmx:100808167 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1770 5 40939726 40944320 Gso8g0127 8 1182354 1186553 GST