Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0096 ATGCAATTGATTAGAGGGCCATCTTGGTGTGGTATACAGAAAGGTGAGCAAAGAAAGACTGAAAAAGTGCAAGTGTTTATGGATTGGAATTTGAAAGCACCTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAACTAAGGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAAGTGGGAAATTCTGGCACGGAATCATCAGTGTTGACTAAGTCCAAAGATGGTGGTGCTGTTGGAGTCTCCAAAATGATATCCTCATCTTCTTCAGGGTCAGCTAAGAGAGCTCGTTCCCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTGGACGGGTGCCACTCTGATCTCAGTAACTGCAGAGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAGGTCACAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGATGGGCACAACCGACGGAGAAGAAAGCCACAACCAGAAGTTGTTCTAACGCGGTCTGCTAGTTTTTTGTCGAATTACCACCAAGGCACACAATTGCTATCTTTCTCAAGTTCACATGTGTACCCATCCACTACTGTGGTGAATCCTACTTTGGGTGGAGTTCTTACTTCTGGTGATGTAAGGCTTCATGGGCAGAACCACCTCCACCACCAAATGCATTTGGTTGATAAACAGGACCTGTTTCTTGGATCTTCTCCAACCGGTTACAAGGAAGGGAAGCATTTGGCATTCATGCAAGGTGACCACACCCTCAACAACCAGAGCCCACATCTTCCAGGTGCTTCCGTGGGCCCGGCCCAGATGTTTCTTAGGACCAGCCCGTATTCAGAAAGCGGTGGATTGAGATGCAAAATGTTCTGCGATAGCCTAACAGGTTCGGCCCACGGCAACACCTCTCGTGCTCTCTCTCTTCTGTCATCACCACCACAGCCGCACAGTCCTGGAAATGGATTAAACCAAATGGTGAACCCTCACTCGCCACTTATGCAACCCTTGGGCCTGAGCCTGCATGATAACAGCCTGGGCTCCGTGGACCCGGTTTTGGGCCCCAACGGGAGTGACCATTCCTCATCAATGCATCACATAGGTTCTAATGGATCCCAGGTGAATGAGGCCCCTCCACTATTTCCCTTTCAATGGGAATAG 1269 0.4862 MQLIRGPSWCGIQKGEQRKTEKVQVFMDWNLKAPSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGTESSVLTKSKDGGAVGVSKMISSSSSGSAKRARSLSNGTQTVSCLVDGCHSDLSNCRDYHRRHKVCEVHSKTAQVTIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEVVLTRSASFLSNYHQGTQLLSFSSSHVYPSTTVVNPTLGGVLTSGDVRLHGQNHLHHQMHLVDKQDLFLGSSPTGYKEGKHLAFMQGDHTLNNQSPHLPGASVGPAQMFLRTSPYSESGGLRCKMFCDSLTGSAHGNTSRALSLLSSPPQPHSPGNGLNQMVNPHSPLMQPLGLSLHDNSLGSVDPVLGPNGSDHSSSMHHIGSNGSQVNEAPPLFPFQWE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0096 422 MobiDBLite consensus disorder prediction 391 414 - -
Gso8g0096 422 MobiDBLite consensus disorder prediction 338 367 - -
Gso8g0096 422 Gene3D - 115 185 IPR036893 GO:0003677|GO:0005634
Gso8g0096 422 ProSiteProfiles Zinc finger SBP-type profile. 121 198 IPR004333 GO:0003677
Gso8g0096 422 Pfam SBP domain 124 197 IPR004333 GO:0003677
Gso8g0096 422 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 422 IPR044817 GO:0003677
Gso8g0096 422 MobiDBLite consensus disorder prediction 391 413 - -
Gso8g0096 422 MobiDBLite consensus disorder prediction 338 369 - -
Gso8g0096 422 SUPERFAMILY SBT domain 122 203 IPR036893 GO:0003677|GO:0005634
Gso8g0096 422 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 31 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0096 Gso-Chr8 932625 936126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0096 27 422 SBP-box Gene Family AT5G50670 41.363 5.74e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso8g0096 SBP 3.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0096 - - gmx:100805328 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1735 5 40671273 40675333 Gso8g0096 8 932625 936126 GST
Gso8g0096 8 932625 936126 Gso4g1664 4 46472236 46477070 PCT
Gso8g0096 8 932625 936126 Gso6g1422 6 14173138 14178298 PCT
Gso4g1664 4 46472236 46477070 Gso8g0096 8 932625 936126 PCT
Gso6g1422 6 14173138 14178298 Gso8g0096 8 932625 936126 PCT