Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0076 ATGGCAGCTTTTTCATCCCAATACTACCATCCGTTTCTGGTTGACTCCGCATGCCTCTCAATTACTCCTCCCATTATAAACACTTCTAGTACCCTTCCTCCTTCTCCTCATTATCTTCTCAATAATAATAACATTCATATTCAGGAAACCTCTTATAGCGTCACTAATAATCAGGAAACAAGCTGTGTTGATAATCAAAGCTCCAAGGTTACCACCATCAGTGACACTGAGTATTCTGTGGTCAACAAAAACCATAGTCCTGAGACATCCATGGTTGTTGACAAACTTGAAAAAGGTGAGCAGTTCACTCAGAAGGTGGTGACCCCCATGGAGAAGGAGAAGAAGAGAAGAGCAAGAAATGGATCTTCCAAGGAATCAACAGAAGGGGGAAACGAGAAACAAAAGAAGCCAAAAGAAGTGAAGAAGGATGAGAAAAAAGGTGCTGAAGATCCTCCAACTGGCTATATCCACGTTAGAGCTAGAAGGGGTCAAGCAACGGATAGTCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCATTAGTGAATCCCATGTTCTATGACTTGGCCATAGACTTAGACACTCTCATGGTTAGACCCGATCAGAAATTAAATTATAATATAGCATCACCATCACCATGTTTAGCACAATTCAGACCCAACCAGGCCATTGCTTTTGCTGACACAACCACTACCAACAGTTTCCCCACAGCTAATAATGGTGACTATCTTTTGGATTATTCATCCTCACTTTTTCTTCAAGGCCCGAGATCAAATCTCTTCTTTGAGTATAACGGTGGTCAGTTTTGGGACGTGGAAGACCAACGACAAAAGTTTCTTCATCCTTATGGATTCGGCAATAATTCGGGCTCTTTCAATTAA 1020 0.4186 MAAFSSQYYHPFLVDSACLSITPPIINTSSTLPPSPHYLLNNNNIHIQETSYSVTNNQETSCVDNQSSKVTTISDTEYSVVNKNHSPETSMVVDKLEKGEQFTQKVVTPMEKEKKRRARNGSSKESTEGGNEKQKKPKEVKKDEKKGAEDPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLALVNPMFYDLAIDLDTLMVRPDQKLNYNIASPSPCLAQFRPNQAIAFADTTTTNSFPTANNGDYLLDYSSSLFLQGPRSNLFFEYNGGQFWDVEDQRQKFLHPYGFGNNSGSFN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0076 339 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 339 - -
Gso8g0076 339 Gene3D - 161 231 IPR036638 GO:0046983
Gso8g0076 339 MobiDBLite consensus disorder prediction 102 176 - -
Gso8g0076 339 CDD bHLH_AtBPE_like 154 239 - -
Gso8g0076 339 SMART finulus 170 220 IPR011598 GO:0046983
Gso8g0076 339 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 339 IPR024097 GO:0006355
Gso8g0076 339 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Gso8g0076 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Gso8g0076 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0076 Gso-Chr8 718298 721244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0076 32 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 50.000 4.20e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g0076 HLH 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0076 - - gmx:100777509 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1717 5 40435522 40438972 Gso8g0076 8 718298 721244 GST