Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0068 ATGGCGACGTCGGAGGTATCGATCAAGGGAAATTCGGTGAACGGAAAAGGAGATAACAGTTCTGGTGATGCTAGAAACAGTGGAGGCGAGGCTCAGAATGCTTCTTCATCATCATCATCCGCGAGAGACGCGGAAGCTGCGCTTTACAGGGAGCTGTGGCACGCGTGTGCAGGTCCTCTGGTGACGGTGCCCAGAGAAAGAGAGCGCGTGTTCTACTTTCCTCAAGGACACATCGAGCAGGTGGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTCTGTCGGGTCATCAACGTCATGCTCAAGGCGGAGCCAGACACTGATGAGGTGTTTGCTCAAGTGACTTTACTTCCTGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGGTCCTCCGGCGCCGCCTCCTAGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCGTCTGATACGAGCACACACGGTGGGTTTTCGGTGTTGAGGCGACATGCCGATGAATGCCTTCCTCCGCTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGCCAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGACTAGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGACAACAGGGTAATGTTCCATCATCAGTTATCTCAAGCCACAGCATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGCACCATGTTCACTGTGTATTACAAGCCCAGGACTAGTCCAGCAGAGTTTATTGTTCCCTATGATCAATACATGGAGTCTCTCAAAAACAATTATACCATTGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCCGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATACCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTGAGATGGGATGAAACATCAAACATACCACGTCCTGAGAGAGTTTCACAATGGAAGATAGAGCCTGCTCTTGCTCCTCTTGCTCTGAATCCTCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCAGATTCCTCGGTTCTTACTCGTGAAGCTTCTAAAGTAAGCGTAGATCCTTTGCCAACAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAACTTTCGACCTTGAGAGGTAATTTTGCTGAAAGCAACGAATCTGATACGGCAGAGAAGTCTGGTGTGTGGCCACCTGCCACGGATGATGAAAAGATTGATGTTTCTACCTCAAGAAGGTATGGGTCAGACAGCTGGATGTCAATGGGAAGGCATGAACCAACATATCCAGATCTACTTTCAGGCTTTGGGGCCCACGGAGATCATTCATCCCATCCATCATTTGTTGATCAAAATGGTCCTGTAGCTAACCTTAGTAGAAAACATTTGCTGGATCGTGAAGGCAAACATAATGTTCTTAGTCCTTGGCCTGGAGTGCCATCTAGCCTATCACTGAATCTCTTGGACTCGAATTTAAAAGGCTCTGCTCAAGGCGGTGATACAGCTTACCAAGTACGAGGGAATCTGAGGTATAGTAGTGCATTTGGTGAGTACCCTGTGCTTCATGGACATAAAGTTGAGCATTCCCATAGAAGCTTTTTGATGCCACCACCACCATCAACTCAATATGAGAGTCCTCGTTCAAGAGAACTGTTGTCCAAACCAATATCAGGAAAACCTTGTGAGGTTTCAAAACTGAAAGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCGCCCCATTGCATCAGAGCCTTCTCTATCACAAAGAAATGTTACAAGTGAGTCAGTTGGTCACATGCATACAGCATCACACCATCAACGTGCAATTGAAAATGATCAGAAGTCTGAGCATTCTAGGGGTTCAAAACCAGCTGATGGTCTGCTGATTGATGACCACGAAAAGGTGTTACAAACTTCTCAGCCACATCTGAAAGATGTACAAGCAAAATCTCATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGTATTGCACTTGGTAGGTCAGTGGACCTCACAAAATTCAGTGATTATGGGGAATTAATTACTGAATTGGATCAACTATTCGAATTTGGAGGTGAATTAACTTCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCAATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAGAATGAAGAGAATCAATCTGCCAGTGAAGGTGCAGCAGACGCACAAGAAATCGAGTGTCAGCTCAATCATTCATCTTCAGATACCTGA 2556 0.4644 MATSEVSIKGNSVNGKGDNSSGDARNSGGEAQNASSSSSSARDAEAALYRELWHACAGPLVTVPRERERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPLALNPLPMPRPKRPRSNVVPSSPDSSVLTREASKVSVDPLPTSGFQRVLQGQELSTLRGNFAESNESDTAEKSGVWPPATDDEKIDVSTSRRYGSDSWMSMGRHEPTYPDLLSGFGAHGDHSSHPSFVDQNGPVANLSRKHLLDREGKHNVLSPWPGVPSSLSLNLLDSNLKGSAQGGDTAYQVRGNLRYSSAFGEYPVLHGHKVEHSHRSFLMPPPPSTQYESPRSRELLSKPISGKPCEVSKLKDSDCKLFGISLLSSRPIASEPSLSQRNVTSESVGHMHTASHHQRAIENDQKSEHSRGSKPADGLLIDDHEKVLQTSQPHLKDVQAKSHSGSARSCTKVHKKGIALGRSVDLTKFSDYGELITELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGAADAQEIECQLNHSSSDT* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0068 851 Gene3D - 317 387 - -
Gso8g0068 851 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Gso8g0068 851 Gene3D - 151 256 IPR015300 -
Gso8g0068 851 MobiDBLite consensus disorder prediction 671 697 - -
Gso8g0068 851 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 834 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso8g0068 851 SMART B3_2 154 256 IPR003340 GO:0003677
Gso8g0068 851 MobiDBLite consensus disorder prediction 448 470 - -
Gso8g0068 851 MobiDBLite consensus disorder prediction 1 42 - -
Gso8g0068 851 MobiDBLite consensus disorder prediction 391 427 - -
Gso8g0068 851 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso8g0068 851 MobiDBLite consensus disorder prediction 597 626 - -
Gso8g0068 851 Pfam AUX/IAA family 714 815 IPR033389 -
Gso8g0068 851 PANTHER AUXIN RESPONSE FACTOR 2 33 834 - -
Gso8g0068 851 Gene3D - 723 816 - -
Gso8g0068 851 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Gso8g0068 851 MobiDBLite consensus disorder prediction 406 420 - -
Gso8g0068 851 MobiDBLite consensus disorder prediction 815 851 - -
Gso8g0068 851 ProSiteProfiles PB1 domain profile. 727 809 IPR000270 GO:0005515
Gso8g0068 851 SUPERFAMILY DNA-binding pseudobarrel domain 150 283 IPR015300 -
Gso8g0068 851 MobiDBLite consensus disorder prediction 815 834 - -
Gso8g0068 851 MobiDBLite consensus disorder prediction 654 697 - -
Gso8g0068 851 SUPERFAMILY CAD & PB1 domains 729 804 - -
Gso8g0068 851 CDD B3_DNA 152 254 IPR003340 GO:0003677
Gso8g0068 851 MobiDBLite consensus disorder prediction 654 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0068 Gso-Chr8 654367 659176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0068 1 849 B3 DNA Binding Superfamily AT5G62000 64.538 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso8g0068 AUX_IAA 6.1e-12 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1709 5 40367291 40372082 Gso8g0068 8 654367 659176 GST
Gso8g0068 8 654367 659176 Gso4g1692 4 46911414 46916318 PCT
Gso8g0068 8 654367 659176 Gso6g1394 6 13744254 13749147 PCT