Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0063 ATGCCTTTTCAAATCATGGATCAGAGGGGTGTTTCTGCTTCATCCCACTATTTTGATGACATTTCCTTTCGCTCTGAGAGGAATGTTGGATTACGGAAACCAAAATCCATTAATGACCATTACCCACAAGGAAACAATGGAATGGTAGCATCACCTGGCAACATTTTGAACGCTACACCCCCCCTTGATGTAAATGCAAAAGCTGGCTTACTGTTGCCACAGGCTAGTCTACCTGGGGATAACATACATTCCACGGAATCATCGAATTACCGTACCAAATCATTGTCTAATGCATGTCTGCAGTCAGCACCTACCTCTTATGGTTTAATTGGCAACAAGATTGTGACCAATGCTGCCCCTTTTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTCTTCGGGAATGATGTTCGGTCTGATCATCCCATTACTGCTGGTTCTCCTCCCAAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGCAATCTCCTTCCCGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATGAGTGCTCTTGATGGAGATTTTGGTTTCTTTGGAAGTTCTAAAGGAAAACTTCCTTTAGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTTGTCATGATTTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGGGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTTTCTGGTCTTGATTCACCTGTTTTAAATGATGAGCTTAAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATTCAGAAATGAATAATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAAGCTGCTCTTCGTGCATTGAACAAGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCACCCTAGTTTGATGCACCAGTCTCAAAAGGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATTGACAACTTATCATTAAGACAAAAGGCAACACTGCCTTCTGGAGTAATTGGATCTGGTTGCTTAGAAAATGGATATAATCAGAGATTTCAATCTACAGTTAGGCAACCTTTGAATGCATTTATGGATAATGCATTCATTCATGTGAATTCTGGCATTCACAACACTGTGAGAGGGGCACCTGCCGGAAAAGTGTCCAGTGTTTGTGAGTCAAGTAACTTTGTTGATGCAATGAAATTTGCATCTGGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTATAACTTTTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTAGCAGAATTTAATGCGGGAGGAAATGGGATACGCCCACATCAGGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAACCTTCATCAAGTACCATGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTCTTCTCCGGGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCGCCCTGGGAAAGGCAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAAATGCATCCACTGGATTTTCCTTCTCACAACATGTTTTCTCATGTTGGGGGGAATGGCACCGAACTGACAACCAATGCTGGGCAAAACTCTCCTAAGCAGCTATCTCATGTTTTCCCAGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTTCCAATGAACGTATGAGAAACCTTTATCACCGTAAAAATGAAGCAAGCACCAACAATGTTGATAAAAAACTGTATGAACTCGACTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAAGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCATCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCCTATGCCCGAATTCAAGGAAAAGGTTCTCTTATTGCTCATTTCCAGAACTCAAGCCTGATGAATGAAGACAAACGTTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCATGGGTGCCAATATTAGACTGAGACCCGGAAAATCTCGCACTGCTGGCAACGAGGAGAATCGAAGCCAAGGGAGCCCTTCAACTTTGTCAAGTGGAGAAGAGTCTGCTAATGGGATAGACTCTTCAAAAATCTCTAACTGA 2853 0.4143 MPFQIMDQRGVSASSHYFDDISFRSERNVGLRKPKSINDHYPQGNNGMVASPGNILNATPPLDVNAKAGLLLPQASLPGDNIHSTESSNYRTKSLSNACLQSAPTSYGLIGNKIVTNAAPFESSLFSSSMSEIFSQKLRFFGNDVRSDHPITAGSPPKEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRMSALDGDFGFFGSSKGKLPLVEQPSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTASKHRGFVMISYQDLRAAQNAMQALQNRPLGSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLNDELKQIFGFYGEIKEIYEYSEMNNHKFIEFYDVRAAEAALRALNKIDIAGKQIKLEPGHPSLMHQSQKGQEERDLGQSIIDNLSLRQKATLPSGVIGSGCLENGYNQRFQSTVRQPLNAFMDNAFIHVNSGIHNTVRGAPAGKVSSVCESSNFVDAMKFASGSRFHPHSLPEYRDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPHQGLYHMWNSSNLQQQPSSSTMLWQKSPSFVNDASSPGLPQMSSFARTPPHMLRTPHMMDHHVGSAPVVTASPWERQNSYLGGSPEASGFRLGSLGSGGFHGSWQMHPLDFPSHNMFSHVGGNGTELTTNAGQNSPKQLSHVFPVRHPMSSMSKFDASNERMRNLYHRKNEASTNNVDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKGSLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTAGNEENRSQGSPSTLSSGEESANGIDSSKISN* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0063 950 SMART rrm1_1 255 323 IPR000504 GO:0003723
Gso8g0063 950 SMART rrm1_1 780 856 IPR000504 GO:0003723
Gso8g0063 950 SMART rrm1_1 340 408 IPR000504 GO:0003723
Gso8g0063 950 MobiDBLite consensus disorder prediction 889 950 - -
Gso8g0063 950 MobiDBLite consensus disorder prediction 920 950 - -
Gso8g0063 950 CDD RRM1_MEI2_like 253 328 IPR034453 -
Gso8g0063 950 SUPERFAMILY RNA-binding domain, RBD 780 864 IPR035979 GO:0003676
Gso8g0063 950 Gene3D - 337 433 IPR012677 -
Gso8g0063 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 406 IPR000504 GO:0003723
Gso8g0063 950 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 320 IPR000504 GO:0003723
Gso8g0063 950 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 944 - -
Gso8g0063 950 CDD RRM3_MEI2_like 781 866 IPR034454 -
Gso8g0063 950 MobiDBLite consensus disorder prediction 614 633 - -
Gso8g0063 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 412 IPR000504 GO:0003723
Gso8g0063 950 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 944 - -
Gso8g0063 950 SUPERFAMILY RNA-binding domain, RBD 251 410 IPR035979 GO:0003676
Gso8g0063 950 Pfam RNA recognition motif 2 778 874 IPR007201 -
Gso8g0063 950 Gene3D - 247 336 IPR012677 -
Gso8g0063 950 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 327 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0063 Gso-Chr8 596855 605250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0063 251 405 Eukaryotic Initiation Factors Gene Family AT3G16380 25.568 5.58e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0063 - - gmx:100797893 1880.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0063 8 596855 605250 Gso4g1697 4 47003243 47011962 PCT
Gso8g0063 8 596855 605250 Gso6g1389 6 13654625 13663313 PCT
Gso4g1697 4 47003243 47011962 Gso8g0063 8 596855 605250 PCT
Gso6g1389 6 13654625 13663313 Gso8g0063 8 596855 605250 PCT