Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0046 ATGGGTAGAACTCCTTGCTCTGATAAAGAGCAAATAAACAAAAAGGGACCTTGGTCCAAAGAGGAAGATGAACTCCTCATCAACTACATCAACCTTCATGGCCAAGGCAATTGGAAATCCATTCCCAAAGCAGCAGGCTTGCTTCGATGTGGCAAAAGTTGCAGACTCAGATGGACGAATTACCTGAGACCCGATCTCAAGAAAGGGAACTTTACCGAAGAAGAAAGTAACCTCATCATTCACCTCCATAGCTTACTTGGAAACAAATGGTCTCAAATAGCTACAAGTTTACCCGGAAGAACAGATAACGAGATCAAGAACTACTGGAAAAGCCACCTCAAGCGTTACCTCTATGCCCTAGGAATCGATCCTGTAACCCATAAACCATTCAAGGAAGACACCAACACCACAAGTACTCCACCAAATAATTCTATGGCCACCACCACAAGCACCATCCCCCGCATCTATTATTTTAATGTCTTTCTCAATTCAAAGGTGCATATTAGCGCCGATGATGATTATTCAGCTGATGGTGGTGCAGACTCAAATAGCAGCAGTGGTGTTACCATAGAGGAAGCTTCTCCTCAAGTCAACTTGGAGCTTTCCATTGCTCCACCCTCTCAGCCTCATGAAGATGCTGCTTCCGTGAAACCCTGA 657 0.446 MGRTPCSDKEQINKKGPWSKEEDELLINYINLHGQGNWKSIPKAAGLLRCGKSCRLRWTNYLRPDLKKGNFTEEESNLIIHLHSLLGNKWSQIATSLPGRTDNEIKNYWKSHLKRYLYALGIDPVTHKPFKEDTNTTSTPPNNSMATTTSTIPRIYYFNVFLNSKVHISADDDYSADGGADSNSSSGVTIEEASPQVNLELSIAPPSQPHEDAASVKP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0046 218 Gene3D - 70 116 - -
Gso8g0046 218 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Gso8g0046 218 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 213 - -
Gso8g0046 218 MobiDBLite consensus disorder prediction 178 203 - -
Gso8g0046 218 MobiDBLite consensus disorder prediction 175 218 - -
Gso8g0046 218 SMART sant 67 115 IPR001005 -
Gso8g0046 218 SMART sant 14 64 IPR001005 -
Gso8g0046 218 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso8g0046 218 Gene3D - 14 67 - -
Gso8g0046 218 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gso8g0046 218 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gso8g0046 218 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gso8g0046 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gso8g0046 218 CDD SANT 70 113 IPR001005 -
Gso8g0046 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 62 IPR017930 -
Gso8g0046 218 PANTHER TRANSCRIPTION FACTOR MYB7 1 213 - -
Gso8g0046 218 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0046 Gso-Chr8 432192 433899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0046 1 216 MYB Transcription Factor Family AT2G16720 49.074 1.49e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso8g0046 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0046 K09422 - gmx:100791004 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0046 8 432192 433899 Gso4g1731 4 47374925 47376610 PCT
Gso8g0046 8 432192 433899 Gso6g1357 6 13320907 13322492 PCT
Gso4g1731 4 47374925 47376610 Gso8g0046 8 432192 433899 PCT
Gso6g1357 6 13320907 13322492 Gso8g0046 8 432192 433899 PCT