Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0040 ATGGCATCAGCAATGTTTCGTAGGAACATCATCACCCACTACTCCAAGTTTGCTTCTTCTTTGTCTTCGTTGCCTCGCCATTCCTCAATCTACAACCCTCTCTCTATGTCTGTTTCTTCATTTCATAGCGAAAGTGTTGGTGGTGGTGGTGGGTTGCCATCTTCCATGCGTGGAGCTGTGTATTGGGAACCGAACAAGCCGCTAACCATCGAGGAATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCCTATAACCGGGCAAAAGGAACCCTCTATGATGGTGAAACTCGACTCTTTTTTCGAAACAGTGGAAAACCAGCATACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTTGTGCCAGCAAATGGAGTGTCTGTGTTACCAGACTCATTGCCATATACAGAGTCTGCAATTCTAGGATGTGCTGTTTTTACTGCTTACGGCGCTATGGCTCATGCAGCTCAAGTGCGTCCTGGTGATTCTGTTGCTGTTATTGGAACTGGAGGTGTTGGTTCTAGTTGTTTACAGATAGCTAGAGCCTTTGGTGCCTCAGATATAATTGCTGTGGATGTACGGGATGAAAAGCTACAGAAAGCAAAGACATTTGGTGCTACTCACACTGTAAATTCAGCAAAGGAAGATCCCATTGAAAAGATACTTGAAATTACTGGTGGAAAGGGTGTTGATGTTGCTGTGGAAGCCTTGGGGAAACCACAGACATTTGCTCAATGTACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGATACAAGTTATTGGCTCCTATGGGGGCAGGGCAAGGCAAGATCTTCCAAAGTTAATTAGACTGGCAGAAACAGGTATCTTCAATCTTGGCCATGCTGTTTCAAGAACATACACTTTTGAGGAGGCGGGAAAAGCATTCCAAGATCTCAATGAAGGAAAAATTGTCGGTCGAGCTGTGATTGAGATAATATAG 1284 0.4533 MASAMFRRNIITHYSKFASSLSSLPRHSSIYNPLSMSVSSFHSESVGGGGGLPSSMRGAVYWEPNKPLTIEEFHMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFTSPCVVGHEITGEVVEHGALTDSKTIERLPVGSRVVGAFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFFRNSGKPAYMYSMGGLAEYCVVPANGVSVLPDSLPYTESAILGCAVFTAYGAMAHAAQVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDVRDEKLQKAKTFGATHTVNSAKEDPIEKILEITGGKGVDVAVEALGKPQTFAQCTQSVKDGGKAVMIGLAQAGSLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLGHAVSRTYTFEEAGKAFQDLNEGKIVGRAVIEII* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0040 427 CDD Zn_ADH10 56 425 - -
Gso8g0040 427 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 56 425 - -
Gso8g0040 427 Pfam Zinc-binding dehydrogenase 256 387 IPR013149 -
Gso8g0040 427 Gene3D - 233 370 - -
Gso8g0040 427 SMART PKS_ER_names_mod 63 424 IPR020843 GO:0016491
Gso8g0040 427 Pfam Alcohol dehydrogenase GroES-like domain 81 211 IPR013154 -
Gso8g0040 427 SUPERFAMILY GroES-like 52 259 IPR011032 -
Gso8g0040 427 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 218 391 IPR036291 -
Gso8g0040 427 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 56 425 - -
Gso8g0040 427 Gene3D - 60 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0040 Gso-Chr8 378422 382754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0040 70 377 Monolignol Biosynthesis Gene Families AT4G37990 27.389 7.81e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0040 - - gmx:100775182 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1678 5 40065727 40072341 Gso8g0040 8 378422 382754 GST