Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0039 ATGCCACTTATAAGGAGAAAGCCTTTGGCCTTGGCCGAGCCTCCTGAGGATTTGAAGCAATATGAGCCTGTTTACCAAATTCGGTTTACGAAAGAAATCTTTCAAGATTATCATGATTATTTGAAGCAATTGAATCTATACCGCCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCTGAACAACTTGCTACCGAGAAAGTTCAACAGTTTCCTAAAGAACTGATGACTGTTGCTTTAAGCATTATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAGAAATTGCAGGAATGTTTGTTTGTGGGTGCTGAACTACATGGGAAAAAGGATGATGGAGTTCATCCATGCAAAATATTAAAAGTCATTCAGAAAGGAGTTGACACAGTCTCTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATTAGAGAACAAGCAGAAGTCAGCGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGTGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAGCTAGCAAAAAATCATGGAATATCAACTGACATTCCTGAGGACTTACAAGGAAGGGTTTTCTACAAATATGGACTTTTAGTTTGCTCCAAGAAAAGGAAAAACGAGGAATCACTGGAAGACACTGATAACTGTAAAAGGAAGAAGTTGGATGGCGCACAAGTTGACGATTCTAGCCAAGAGAAAGAAAATGGTCAACACAATGATGAAGCAATCAAATACCCCATTGATGATCTATTGGTGACGCCTAGTCCAGATGATCCTGTATTCACTGATCGTCCTTCTCCAGCAAAAGACTTCAATATTCCAATGAGTTGTGTAGGGGAACTCTTGATGGTTTGGGATTTTCTTAGTTCCTTTGGTAGACTGTTGCAGCTGAGCCCCTACTCTCTAGAAGATTTTGAATTTGCAATCTGCCATAAGGATAGCAATGTGGCTCTCCTTATGGAATCTCATGCAGCACTTTTTCGACTTCTCATCAAAGATAAGGATGAATACTCCTTGGTTGTGAAGAACCGAAAACTGAAGTCTAAGATTACAACCAATAATTGGACAGAATATTTATGTCATTTTCTAGAGATGATCAATATTCCTGAACTACGGCAACATAAAACAACTATAAAACGGGGACATTATGGCCTTGTAGATGCCAGTGCTAAATTAAAAATCTTAGGCGAATTGGTCAATCGAGCCCTTGAAACTGCAATATTCAGGGAAAAGTTAGATGAGATTATTGAACAGCGGCAGGCACTTGGGGCCACTAGAAGGGAAGAAGCATTGGAAAATGGTAGGAGGAGAAGAGAAGAAAAGGAGCGGATGAAAGCTGAGTCAGAAAGCAATGGATTTGTGGATGGGCATCTAAACGGTGCAAATGTCCTAGCAAATAATATTCACGGTATACAAAATGGAGACGTGGGAGAGAAAAGAATTATAGAGATAGAACCATCAGGGCAAAACGATCCATTGGGTAGAAGTGGGATCAAGCATTTAAATCCTGCTCCGAAAAAGACACTTAAGAAGTTAAATTCAGAGCTGAAAGAACCAACGGAAAATGGAAAAGAATTATCCAGAAAGGAATCACCGAAACAGTTGAAGGCTGATAAGGATTCATCAGAGAAGAATAGTAAAGAACAGAGGAAAGAATATTTCGAACGGGAGATGGAGAAACGGTTTATTCGTAGAAGCCCATTAGGTAAGGACAGAGATCACAATAGGTATTGGTGGTTCTGTCGCTATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGAATTGGGGATACTACAGCAGTAAGGAAGAGCTTGATACATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCAAAAGCATCTAGAAAAATATTATAATACAATATGCTCAGAACTCCAGAAAACATCGAAGGATTTGATGCACAGGTTTGTAGATGAGTCTGTGCTTCGTAGGTCTACTCGTGTTAGAGCTCAACCTAGGCAGAACCCCTCCGATGCTTGCCTCAGATATAGAAACAAGTACTATAAAGAAGAATAG 2136 0.3998 MPLIRRKPLALAEPPEDLKQYEPVYQIRFTKEIFQDYHDYLKQLNLYRQRVWMCKVTGKTGLTYEEALVSEQLATEKVQQFPKELMTVALSIIQYSMLPLKDLADSIAEKLQECLFVGAELHGKKDDGVHPCKILKVIQKGVDTVSYEVAWLDKNKNIREQAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEDLQGRVFYKYGLLVCSKKRKNEESLEDTDNCKRKKLDGAQVDDSSQEKENGQHNDEAIKYPIDDLLVTPSPDDPVFTDRPSPAKDFNIPMSCVGELLMVWDFLSSFGRLLQLSPYSLEDFEFAICHKDSNVALLMESHAALFRLLIKDKDEYSLVVKNRKLKSKITTNNWTEYLCHFLEMINIPELRQHKTTIKRGHYGLVDASAKLKILGELVNRALETAIFREKLDEIIEQRQALGATRREEALENGRRRREEKERMKAESESNGFVDGHLNGANVLANNIHGIQNGDVGEKRIIEIEPSGQNDPLGRSGIKHLNPAPKKTLKKLNSELKEPTENGKELSRKESPKQLKADKDSSEKNSKEQRKEYFEREMEKRFIRRSPLGKDRDHNRYWWFCRYGRIFVESCDSKNWGYYSSKEELDTLMSSLNCKGERERALQKHLEKYYNTICSELQKTSKDLMHRFVDESVLRRSTRVRAQPRQNPSDACLRYRNKYYKEE* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0039 711 Coils Coil 455 479 - -
Gso8g0039 711 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Gso8g0039 711 MobiDBLite consensus disorder prediction 538 580 - -
Gso8g0039 711 MobiDBLite consensus disorder prediction 454 478 - -
Gso8g0039 711 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Gso8g0039 711 SMART testlast3 303 364 IPR018501 -
Gso8g0039 711 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 591 657 IPR028941 -
Gso8g0039 711 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Gso8g0039 711 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 709 - -
Gso8g0039 711 MobiDBLite consensus disorder prediction 454 484 - -
Gso8g0039 711 Pfam DDT domain 304 361 IPR018501 -
Gso8g0039 711 MobiDBLite consensus disorder prediction 514 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0039 Gso-Chr8 371810 377742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0039 570 656 Homeobox Transcription Factor Family AT1G28420 38.542 4.54e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso8g0039 WAC_Acf1_DNA_bd 2.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0039 - - gmx:100789956 1429.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1677 5 40058225 40065073 Gso8g0039 8 371810 377742 GST
Gso8g0039 8 371810 377742 Gso6g1348 6 13245477 13251266 PCT
Gso6g1348 6 13245477 13251266 Gso8g0039 8 371810 377742 PCT