Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0023 ATGAGCAGAGAAAATACGCCAGCAATGGCAAAGGAAGAAGTCTGTGATGATGGTTCCTCCAGTGTTGAGAATGTGGATTTAGAATCTCATGCTCGAATTAGTCTCGACAAGGATAATGGCTTGGGAACCTGTCGTGTGTGCCAATGTACCGAATCTGATAAAAAGGCAGATGCCGCACTAGAATTTTTGGGCATCATTCCAGGTTCAGAAATGTGTAAAACCAAGGGGGAAGTGGGATCTGATGGTGGTGGCGATGGAATTCCCGAAAATACGTCTCTTGACAGAAATAATGAGAAAAATGCTGGTATGGTGGAATTTGTAAGCCCTAATGGGGAGGTTTTCATTTGTAAAAGCGATTTGGAACTTGGTTTGTGTCATCAAGATAAATTAGTTGAACTTGGATGTTCTTGTAAAAACGACCTTGCTTTAGTACATTATGCTTGTGCACTTAAGTGGTTTGTCAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAATTTCTGACTTCAATAAGGTTGTTGGTGCTTTGAAGGAGTATGAAGTATTGAGGGAAAGAACTGCTAGTGGGGATCCTGGTGCCGCACATGTTCATGCAAATGCTGTTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTGTCCTTATAATAACAGTCACAATAACAACATCAGCAGTGTGGACACAGTTTCACAGATTGTTTCTGAGCAGCCTTTAAGTATTGTTACTGAAGATGCTGCCCCCACACAGAATCCTGCAACCAAGTGGGCCGTGGAGGGTACAGGGATCCTGCTTGCTACGGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCTAGAAGTGGTCTTCATATCTTACTTGGAGGAGTTTGTGCTTTAGCCGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCAAGGACCCATGGTGCCCACACAACATGA 1092 0.4359 MSRENTPAMAKEEVCDDGSSSVENVDLESHARISLDKDNGLGTCRVCQCTESDKKADAALEFLGIIPGSEMCKTKGEVGSDGGGDGIPENTSLDRNNEKNAGMVEFVSPNGEVFICKSDLELGLCHQDKLVELGCSCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGALKEYEVLRERTASGDPGAAHVHANAVVDPDAVAAIRRQRLSEIALWFCPYNNSHNNNISSVDTVSQIVSEQPLSIVTEDAAPTQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGVCALAVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0023 363 ProSiteProfiles Zinc finger RING-CH-type profile. 105 171 IPR011016 GO:0008270
Gso8g0023 363 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 362 - -
Gso8g0023 363 PANTHER ZINC FINGER, RING-CH-TYPE 22 362 - -
Gso8g0023 363 Pfam RING-variant domain 129 164 IPR011016 GO:0008270
Gso8g0023 363 MobiDBLite consensus disorder prediction 1 22 - -
Gso8g0023 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 174 IPR013083 -
Gso8g0023 363 SUPERFAMILY RING/U-box 126 167 - -
Gso8g0023 363 SMART ringv_2 115 165 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0023 Gso-Chr8 207300 210875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0023 1 353 C3H Transcription Factor Family AT5G08750 61.602 1.94e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0023 - - gmx:100805323 667.537