Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0015 ATGGCGAAGAACAACAAGAGCACTAAGAAACCGATGAGCCTCAACGACAGTCACTATCGCTTCCTACAGGAGCACTCTGCTCCTCCCAAACCCACCTTCGATGAAGAATCGATCAAAGCCTCCACCCGTAAACAACACCAAAACATCCCCCAGTTCTCCGCAATCACCGACTTCGATTCTCCATTCGGGTTAAGCTCGGACGAGAAACAACAACAAGCTCCATCCCATGATATTCCCCAATTTTCGCTTAACTCTACTCCTAGGCCAAACTTGGACAAGAAACACGAACCAATCAAGTTTCATGATGATGACGAAGAAGAAGAAGAAGTTCCACCAAACGATATTCCCCAATTTTCGATTAACTCCAATCCTAGTCAAAATTCGGACGTGAAACGTGACCCAATCAAGTTTCATGATGATGAAGAAGAAGAAGCTCCACCCGACGCGGTTAATTTCCCCCCTAAGGAAGAAAAGAAGGCGAAGGTGAAAGTACAGGGGCGGCGTCGCCTCTGCAAGGTTGTGCATGAAGATGCAGGCAAAAGTGTGGCGGTTGACGAGTCCAAGTTTGATGAACTCATTGACCTTGATTCTCCGATTCCTGCACCGAGAAAGGTGATCCAGATTGAGGAGAGCGGGGGCAAGAATGAAATTACGGATATTTTGAACGAACTAAACTCTAAGTTTGAGCTGCTGTCGGTTGAGAGGAAGCCGAAGCCAAAGCATGTTGAAGGTCTGGTTGGAGGAGAAAAAAATTGTGATGATGATGGTTCAGAGTTTGGGAGTGCAGGTTCTTCGTTTTCTCCACAACAGGAGAGCTTGTCAGAGGGTACGAAGAATGGTGATGGGGATGATATTGAGTATGATGCAAATGATTCTGTTCAAGAGTTGGATCATTTTGAGCCTGAGACTGATGGTTCTATAACTTTTACTGGCCCCAGATCGACTTATAAGTTGCAGGCTAAAATTGCGAAAATGTTGTATCCGCATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGTGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGTTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGGGTGTTGATTGTAGCCCCCAAAACTTTATTGCCCCATTGGATCAAAGAGTTGTCAGCTGTGGGTCTATCTGAGAAGACAAGAGAATATTTTGGAACTTCTACAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAATGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACAGGGGAATAATTATTTTGATGATGAGGATAATGAAGAAGGCGCAACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGCGGCACTCCTTTGCAAAATAACCTGAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGTGACCACAAATGGTTCAAAGAAAGATTTGAAAATCCCATACTTCGTGGAAATGACAAGCATGCTTCTGACAGGGAGAAGCGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATCGTATTCATCCTTACTTTTTGAGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGAGAAAACAACTGCAAAACTTTCTCAGAAACAGGAGATCATTGTGTGGCTTCGACTGACCAGTGTTCAGCGGCATCTGTATGAAGCATTCTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGCGATCATCCACTTTTGTTGACAAAGCGAGCTGCGGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCAAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGGCACAGATAAGTTTAAAGATGAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTAGTATCTGAAGGTTATGACTTTTTACGAATTGATGGCACCACAAAAGCCACTGACAGACTAAAGATTGTTAACGATTTCCAAGAAGGTTTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGCGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGGGCATATCGAATTGGTCAAAAGAAAGATGTTCTGGTATATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATACAAGGGAGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTTAGGGAGCTTTTTAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAACATACAGTTGATGACTCTTTCAGAGCACATCTAGAGTTTTTGAAAAGTCACAGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGACAGCGCCAGTTCGAACTGATCCTGAGGATGATGAAGTTACAAGGAATCATGGGGCCAAATATGTTGGAACTTCCAGATCACCTTCAAATGAGCATGCTGCTTATGGCCCGGAGTTTGCATTTAATCCTAAGGATGTCAGGTTAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGAGTATCTCTCAAACACTCTCAAATATGGCTTCTAAATTACCTGACAAGGGCGAGAAACTACAGAAACGGCTTGCCGAGTTGAATTTAGAGCTCGCTGAACTGAAGAGGGAAGAAAGAAATGTGGTTGATTTGGATGATTTTACTACTGAATTTCAACGGGTGTTGAATGTATAG 3093 0.4258 MAKNNKSTKKPMSLNDSHYRFLQEHSAPPKPTFDEESIKASTRKQHQNIPQFSAITDFDSPFGLSSDEKQQQAPSHDIPQFSLNSTPRPNLDKKHEPIKFHDDDEEEEEVPPNDIPQFSINSNPSQNSDVKRDPIKFHDDEEEEAPPDAVNFPPKEEKKAKVKVQGRRRLCKVVHEDAGKSVAVDESKFDELIDLDSPIPAPRKVIQIEESGGKNEITDILNELNSKFELLSVERKPKPKHVEGLVGGEKNCDDDGSEFGSAGSSFSPQQESLSEGTKNGDGDDIEYDANDSVQELDHFEPETDGSITFTGPRSTYKLQAKIAKMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRVLIVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDNGVLLTTYDIVRNNSKSLQGNNYFDDEDNEEGATWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDHKWFKERFENPILRGNDKHASDREKRVGSSVAKELRDRIHPYFLRRLKSEVFNQDDEKTTAKLSQKQEIIVWLRLTSVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAEKLAMHIADVAGTDKFKDEQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIQECLVSEGYDFLRIDGTTKATDRLKIVNDFQEGFGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTVDDSFRAHLEFLKSHSIAGVSHHSLLFSKTAPVRTDPEDDEVTRNHGAKYVGTSRSPSNEHAAYGPEFAFNPKDVRLSKKGSSPSSAGKLTESEIKDKIKSISQTLSNMASKLPDKGEKLQKRLAELNLELAELKREERNVVDLDDFTTEFQRVLNV* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0015 1030 MobiDBLite consensus disorder prediction 43 88 - -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 1 163 - -
Gso8g0015 1030 PANTHER SNF2/RAD54 FAMILY MEMBER 297 1004 - -
Gso8g0015 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 857 IPR027417 -
Gso8g0015 1030 Pfam SNF2-related domain 329 633 IPR000330 GO:0005524|GO:0140658
Gso8g0015 1030 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 338 513 IPR014001 -
Gso8g0015 1030 PANTHER OS04G0692700 PROTEIN 297 1004 - -
Gso8g0015 1030 Pfam Helicase conserved C-terminal domain 683 795 IPR001650 -
Gso8g0015 1030 Gene3D - 304 562 IPR038718 -
Gso8g0015 1030 Coils Coil 990 1017 - -
Gso8g0015 1030 CDD SF2_C_SNF 675 806 - -
Gso8g0015 1030 SMART ultradead3 321 524 IPR014001 -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 258 276 - -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 241 288 - -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 241 256 - -
Gso8g0015 1030 Gene3D - 582 881 IPR027417 -
Gso8g0015 1030 SMART helicmild6 712 795 IPR001650 -
Gso8g0015 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 563 IPR027417 -
Gso8g0015 1030 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 686 845 IPR001650 -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 907 939 - -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 115 130 - -
Gso8g0015 1030 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0015 Gso-Chr8 128597 136420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0015 326 845 RAD5 or RAD16-like Gene Family AT3G16600 24.872 5.62e-25 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso8g0015 SNF2_N 1.7e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0015 K20093 - gmx:100779283 2015.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1649 5 39764690 39775442 Gso8g0015 8 128597 136420 GST