Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0002 ATGAACGAATCTCAAAACGCCATTCCCCATTTATTTAGATGCCCCATCAGTTTAGACTTGTTTGAAGATCCTGTAACTTTATGCACTGGCCAAACCTACGACAGATCAAACATAGAAAAATGGCTTGCTCAGGGTAACCTCACATGTCCTGTCACAATGCAAAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGATCAGTGGCTTCAACTTGATCCCCAATTCGACCCTGCTAACCCTGAAGCTTCAACTATTGAATCCTTAGCTTCTCTGAAACTCAACCTTGAATCCTATGAAAGCAGCTTAGAAAACAAGCTCCAAGCACTTAGGAAAATCAGTGTCTTATCTGATGAGTATTGCTCCTTCAACAAATCATGCTTCCTCCAATTGGATTTCCTACCACTGCTTTTGGAACTAGTTTTTGGAACTCAAGTGTCACCAGAAAATGACATGAACTTCATAGAGCTTGCACTTTGTTGCATTAAAAAATTGCTACCACTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCGACGTTTGTGCTACTATTTGAAAAGGGTACTAACTCCGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCAGCATCATCATCATCATCTGAGACAGAAGATTTATGTTCTACTCTTGGAAAAACTAACGAACTAGTGCACGAGATTGTTCAAGTTGTTAACCAAAATTACGAGGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTATGTTCGTTGCAGTCCAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGAAGAAATTATGAGATACATTACATCATCAGAAAGAAGAAACATGGCACCAGTGGCAATGAGAATAGTAGAGAAACTTATGGGGCTGAGAAGTGCTAAAGAGGCATTGGTGAATCACCCTAATGGTGTTCAAACTTTGGTGAATATGGTTTTCAGGGTATCTGATCAAAAGTGCAGTGAGAGTGCTGTTGAAGTGCTTTTAACTGTTTGTGGTGAATTTGAGCGTGCAAGAGAGGAAGCCATTGAGAGTGGAGTTTTGACTCGGTTGCTGTTGCTTCTGCAGAGTCAGTGTAGTAACACAACAAAATCAAAGGCAAGAATGCTGCTCAAATTGCTAAGATCCTAG 1167 0.4105 MNESQNAIPHLFRCPISLDLFEDPVTLCTGQTYDRSNIEKWLAQGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLDPQFDPANPEASTIESLASLKLNLESYESSLENKLQALRKISVLSDEYCSFNKSCFLQLDFLPLLLELVFGTQVSPENDMNFIELALCCIKKLLPLGSLEPLNMIKDGSKLATFVLLFEKGTNSVKTSLCRVIESASSSSSETEDLCSTLGKTNELVHEIVQVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGGAIEEIMRYITSSERRNMAPVAMRIVEKLMGLRSAKEALVNHPNGVQTLVNMVFRVSDQKCSESAVEVLLTVCGEFERAREEAIESGVLTRLLLLLQSQCSNTTKSKARMLLKLLRS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0002 388 PANTHER OS02G0542800 PROTEIN 7 388 - -
Gso8g0002 388 SUPERFAMILY ARM repeat 226 384 IPR016024 -
Gso8g0002 388 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Gso8g0002 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Gso8g0002 388 Gene3D - 87 296 IPR011989 -
Gso8g0002 388 Gene3D - 297 388 IPR011989 -
Gso8g0002 388 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Gso8g0002 388 Coils Coil 94 114 - -
Gso8g0002 388 CDD RING-Ubox_PUB 12 54 IPR045210 -
Gso8g0002 388 PANTHER WDSAM1 PROTEIN 7 388 IPR045185 GO:0061630
Gso8g0002 388 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Gso8g0002 388 SUPERFAMILY RING/U-box 5 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0002 Gso-Chr8 38452 40166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0002 8 372 U-box Gene Family AT3G19380 29.659 6.55e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0002 - - gmx:100805322 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1633 5 39661998 39663669 Gso8g0002 8 38452 40166 GST