Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g0001 ATGTATGTGAAAACGGCTTGTTGTTTCACCCCTAGCCTGCGGAAAATGCTTTATTGTGTTTCGGATATCAATTTAAAGTTCACAGTTATGCGAATAGCCAGTGCATTAGTGAATGGCAGCGCTCTTCATTTCCACTTACCTAGATTTCTATATGTGCGTCATCATTCATCAATCAAGTTGTTTGTCACAGGGCTTTCCTATGATACCAATGAACCGGTTCTGAGAGATGCCTTTGGGCAACATGGTGAAATCATTGAAGTTAAAGTAATATGTGATCATGTGACTGGAAAATCAAGAGGATATGGATTTGTGCGGTTCCTTTCTGAAACTATAGCTGCTGCAACTCACAAAGAAATGAATGGCCAGATACTGGATGGAAGATGCATTCGAGTGAGTTATGCACACAAAGATTAG 414 0.401 MYVKTACCFTPSLRKMLYCVSDINLKFTVMRIASALVNGSALHFHLPRFLYVRHHSSIKLFVTGLSYDTNEPVLRDAFGQHGEIIEVKVICDHVTGKSRGYGFVRFLSETIAAATHKEMNGQILDGRCIRVSYAHKD* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g0001 137 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 137 - -
Gso8g0001 137 Gene3D - 51 137 IPR012677 -
Gso8g0001 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 130 IPR000504 GO:0003723
Gso8g0001 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Gso8g0001 137 SUPERFAMILY RNA-binding domain, RBD 55 136 IPR035979 GO:0003676
Gso8g0001 137 SMART rrm1_1 59 132 IPR000504 GO:0003723
Gso8g0001 137 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 32 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g0001 Gso-Chr8 5467 16841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g0001 60 137 Eukaryotic Initiation Factors Gene Family AT4G34110 42.308 3.17e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g0001 K13195 - gmx:100802141 282.722