Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2312 ATGGCTTCAACTCTCAAATCTGGCGGAATTCATACAGGGGCAATCAATGATGATTTATACAAGGAATTGTGGCATGCATGTGCTGGTCCCCTTGTCACTCTCCCTCGTGAAGGGGAACGAGTCTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCTATGTATGAGGGATTAGAGCAGCAGATGCCTTCCTTCAACCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACCAGCCCTGATGATCCTCTGCCTGAATCTCCGAGGGTCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGACACAAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCAGACGATTGTCTGCCTCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATGGGAATGAATGGCATTTTAGGCATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGCTGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTCATGAGACAGCAAAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTCAACAAGTATCTGGAAGTTCAGAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGCGATTTGAGGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATCGTCGGTCTGGCCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCATCCTCAATTTTGCGTCCTGACAGAGTTTCATCATGGGAATTGGAGCCACTTGTGTCTACCACTCTTGCAAACTCGCAGCCAACCCAAAGAAACAAGAGGGCACGGCCTCTCATTCTACCTTCTACAATGCCCGATTCTTCTTTGCAAGGCATATGGAAATCATCAGTTGAATCTACCTCTTTCTCTTATTGTGACCCCCAACAAGGACGTGGCCTCTATCCATCACCAAAGTTCAATTCTTCTGCAACTAACTTTATTGGTTTTAGTGGGAATAGCTCTGTGGGATCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATAACTTGGAATCTATTTCAGCTATAGCTCTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGAAGGAAATCTACAAACAGTCACTTTGTCAGGAAGGGTGGGTGATGATAGGTCGGTTCCATCTTTAGATGCTGAGTCTGATCAACATTCTGAACCATCAAATGCCAACCGATCTGATATTCCTTCAGTTAGTTGCGATGCTGAAAAATCATGCCTGCAGTCTCCCCAGGAGTCACAAAGCAAGCAAATAAGGAGCTGTACAAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTAACACGATTTGATGGATATGAGGATCTTCTCAGGAAATTGGAAGATATGTTTAACATCAAGACTGAGCTCTGTGGGTCCCTAAAAAAATGGCAAGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGACGATCCGTGGGATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCGAAAATAAGACTTCCAATGAATGAAAAAGTTAACCCAAGCAAGCAGGATTCAGAAGCAATAGTGAATCCTGAGGACCAGTCATCTAATATGGGGCCCAGCTGCTAG 2025 0.439 MASTLKSGGIHTGAINDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLAAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEVQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSSVWPDSEWRSLKVQWDEPSSILRPDRVSSWELEPLVSTTLANSQPTQRNKRARPLILPSTMPDSSLQGIWKSSVESTSFSYCDPQQGRGLYPSPKFNSSATNFIGFSGNSSVGSPSNKSIYWSNRMENNLESISAIALKEAGEKRQGTGNGCRLFGIQLLENSNAEGNLQTVTLSGRVGDDRSVPSLDAESDQHSEPSNANRSDIPSVSCDAEKSCLQSPQESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEDMFNIKTELCGSLKKWQVVYTDNEDDMMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSPKIRLPMNEKVNPSKQDSEAIVNPEDQSSNMGPSC* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2312 674 Gene3D - 287 362 - -
Gso7g2312 674 PANTHER AUXIN RESPONSE FACTOR 9 9 650 - -
Gso7g2312 674 SUPERFAMILY DNA-binding pseudobarrel domain 120 253 IPR015300 -
Gso7g2312 674 MobiDBLite consensus disorder prediction 511 528 - -
Gso7g2312 674 Gene3D - 545 639 - -
Gso7g2312 674 Pfam Auxin response factor 250 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso7g2312 674 ProSiteProfiles PB1 domain profile. 550 643 IPR000270 GO:0005515
Gso7g2312 674 MobiDBLite consensus disorder prediction 497 528 - -
Gso7g2312 674 MobiDBLite consensus disorder prediction 645 674 - -
Gso7g2312 674 CDD B3_DNA 122 224 IPR003340 GO:0003677
Gso7g2312 674 SUPERFAMILY CAD & PB1 domains 552 627 - -
Gso7g2312 674 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Gso7g2312 674 MobiDBLite consensus disorder prediction 650 674 - -
Gso7g2312 674 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Gso7g2312 674 Pfam AUX/IAA family 597 640 IPR033389 -
Gso7g2312 674 Pfam AUX/IAA family 542 592 IPR033389 -
Gso7g2312 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 650 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso7g2312 674 Gene3D - 121 226 IPR015300 -
Gso7g2312 674 SMART B3_2 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2312 Gso-Chr7 46701546 46708998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2312 1 673 B3 DNA Binding Superfamily AT1G59750 68.741 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso7g2312 B3 7.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2312 K14486 - gmx:100815450 1351.65