Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2299 ATGGCAATTGCAGCGGCAAACTCATCACCCACCATGAGCCTCAGCCATAGCCAGAGCCAAGAGGATGCCACCACCAACGACAACAAGCCCGTCGTCGTCGACGATGATCACGAGCACGACATGGTCATGCCCGGCTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTTATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCCGCCTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCCAGAGATAGGAAGTATCGCAACGGTGATCGTCCCAATCGCGTTACTACCTCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACCGAGAATTTTCGCTCTATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATTCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGTGTGTACAAGAGAGCTGGAGTCGAAGACCATCCTTCCCTCCCTCGCTGCCTCCCAACGAGGCCATCCTCATCATCAAGGGCTTCTTCTGATCACATCAATAATAATAAGTCGACGAAGCACAATGAAATGGTTCAACACCACAACATCAACATGGGATTCATGGGACAATCAAAGCCGCCAACAACTGAACACATAGTTGACAAAATTAATGAATCGGAAGCAAGCAGTGATGTCAACACAACTCTTGGACTTTCTAAATACAATGCTTACCGTGCTGCCACCATGGCGCTTCCAGTTGTTCCAATGGATGAGGAAGCCTTGATGATGATGCAGCAATCTAAGCAAGCTGCTGCTGCAGCAGCACATGTTCCAACAATCTTCTCTGCTGGGCCTTCTAGTTCCAACAACAGTGGAGTAGTGAATATGGATGATCTGAATAGGCTAATGAGTTATCAACATCAGTACTACAATGTTCAAAGCCAAAGCCATCCCAATCAGTTCTCTACTTTGCTGATGCAACCTTCACCAATAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCACCCACCTTCTCTGACCGACTCTGGGACTGGAATCCAATCCCTGAGTCACCAAGTCAAGAGTACAGCAACATATCCTTCAAGTAA 1203 0.4796 MAIAAANSSPTMSLSHSQSQEDATTNDNKPVVVDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSSRASSDHINNNKSTKHNEMVQHHNINMGFMGQSKPPTTEHIVDKINESEASSDVNTTLGLSKYNAYRAATMALPVVPMDEEALMMMQQSKQAAAAAAHVPTIFSAGPSSSNNSGVVNMDDLNRLMSYQHQYYNVQSQSHPNQFSTLLMQPSPIVSLSSLPNPLPPTFSDRLWDWNPIPESPSQEYSNISFK* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2299 400 Pfam No apical meristem (NAM) protein 44 168 IPR003441 GO:0003677|GO:0006355
Gso7g2299 400 Gene3D NAC domain 51 192 IPR036093 GO:0003677|GO:0006355
Gso7g2299 400 MobiDBLite consensus disorder prediction 202 217 - -
Gso7g2299 400 ProSiteProfiles NAC domain profile. 42 189 IPR003441 GO:0003677|GO:0006355
Gso7g2299 400 SUPERFAMILY NAC domain 42 188 IPR036093 GO:0003677|GO:0006355
Gso7g2299 400 MobiDBLite consensus disorder prediction 1 27 - -
Gso7g2299 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 22 394 - -
Gso7g2299 400 MobiDBLite consensus disorder prediction 195 224 - -
Gso7g2299 400 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 394 - -
Gso7g2299 400 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2299 Gso-Chr7 46579411 46581911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2299 41 400 NAC Transcription Factor Family AT2G02450 49.873 1.23e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso7g2299 NAM 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2299 - - gmx:100812779 771.155