Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2295 ATGAGCCAAAGAGTATTAGTAGTCCTGCTGCTTGTTTTGAATTATGTGTTGGTTGCAGAAGGAGAAACAGCTGATGGAGATTTGACCACATTTTTGTCTCTTATAAATACCTGGGAGAACACCCCTCCTAATTGGGTGGGTTCAGATCCTTGTGATGATTGGGTTGGAATCAAGTGCAAGAATTCACACATTACATCAATAACATTATCAAGCACCGGTTTGGCTGGTCAGCTTTCTGGAGATATTGGATCACTATCTGAATTAGAGACTTTGGATCTATCTTACAACAAGGACTTGACTGGACCACTTCCAGAATCCATTGGGGAATTGAAGAAGCTGGCAACCTTAATTCTTGTTGGTTGTAGCTTCAAGGGTCCTATTCCAGACAGCATAGGAAATATGCAGGAGCTCCTCTTCTTATCATTAAATTCCAATAGCTTTAGTGGACCAATTCCTCATTCTATTGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCTGACAATCAACTTCAAGGGAACATCCCGGTATCTAGTGGCGACATATCTGGTCTTGATAAGTTACACCATGCCAAGCATTTTCATCTTGGGAAGAATAATCTCTCAGGCAGTATTCCTCCTCAACTTTTTAGCTCGGAAATGGCTCTGATTCATGTGCTTTTGGAAAGCAATCAACTCACTGACAAGATTCCACCTACCCTTGGACTAGTTCAGAGTCTGGAGGTGGTGCGCTTAGATGGTAATTCATTAAATGGACCTGTGCCTCCAAACATCAACAATCTTACTCATGTTCAAGATCTGTACTTGTCCAACAATAAACTGTCAGGCTCCCTGCCAAACCTTACTGGAATGAATGCCCTCAGCTATCTGGACATGAGCAACAATAGTTTTAAGCCATTGGATTTTCCAGGATGGTTTTCAACTCTTAAGTCCTTAACAACATTAAAGATGGAGAGAACACAACTTCAAGGACAGGTTCCTACTTCTTTGTTTACACTTATCAATTTACAGATTGTGGTTCTAAAAGACAACAAAATAAATGGTACCTTGGATATCGGCTCCTCCTACAGCAATCAGCTGCGACTTGTTGATTTTGAGACTAATTCAATTGACAGCTTTGAGCAAAAAGACGAAGTTCCAAATGTGAAAATCAAGATAATACTTAAAGATAACCCAATTTGTCAAGAAAATGGAGAACTAGAAAGCTACTGCTCCTCTTCTCAACCCAATGTCTCATATTCAACACCACTAAATAACTGTCAACCTGGTACCTGCAGTTCAGAACAGATTCTTAGTCCCAACTGTATATGCGCATATCCATATTCAGGAACCTTAACTTTCAGGTCACCTCCCTTTTTGGACTTTGATAACAAAACTTACTACTCAATGCTTGAGGAGGGTCTTATGAACTCTTTTAAGTCTCATTTTCTACCTGTGGATTCGGTTTTGTTGAGCCATCCAAGTAAGGATTCAACTCAGTATCTCGAATTGAGCTTACAAGTCTTCCCATCAGGACAGAATCATTTCAATCGAACAGGGGCTTTTAGCATTGGTTTTCTGCTTAGCAACCAGACTTTTAAGCCTCCTAAAGTTTTTGGACCATTTTATTTTGTTGGAGATAAATATGAACACTTTGAAAACTCTGAAGGATTGACTGAATCGAGTAAATCTTCAAACATTGGAATCATAATTGGGGCAGCAGTGGGTGGTTTGGTCCTGCTAGTGTTACTACTACTAGCAGGTCTTTATGCTTTCCGCCAAAAGAAAAGGGCCGAAAAAGCAATTGGACAAAGCAATCCCTTTAGACGCTGGGATACAGCTTCGAGCAAGAGTGAGGTCCCTCAGTTGACAGAAGCAAGGATGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAAAATTTTTCTCAAGTCAATGGCATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAAACCTTCCCAATGGACAAGTGATAGCAATAAAACGAGCTCAAAAAGAATCTATGCAGGGAAAGCTTGAGTTTAAAGCGGAAATTGAGCTCCTATCAAGGGTCCACCATAAGAATCTTGTCAGCCTTGTGGGATTCTGCTTTGAGCACGAAGAACAAATGCTGGTTTATGAGTATGTTCAAAATGGAAGTTTAAAGGACGCTCTCTCAGGGAAGTCAGGAATTAGATTAGATTGGATTAGAAGGCTAAAAATTGCCCTTGGTACTGCCCGTGGTTTGGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATCAAATCAAACAATATTTTGCTGGATGACCGCCTGAATGCCAAAGTTTCTGATTTTGGTCTCTCCAAGTCTATGGTTGATTCTGAGAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGACGTTTATAGCTTTGGAGTGCTCATGTTGGAGCTGATTTCAGCAAGAAGGCCGTTGGAACGAGGGAAGTATATTGTGAAAGAGGTTAGGAATGCACTTGATAAGACAAAAGGGTCATATGGTCTTGATGAGATCATTGACCCAGCCATTGGTCTAGCGTCCACCACACTGACACTGAGCGGTTTTGACAAGTTTGTGGATATGACCATGACATGTGTTAAAGAGTCAGGTTCTGACAGACCTAAAATGAGTGATGTGGTAAGAGAAATCGAAAACATCTTGAAGTCAGCCGGTGCAAACCCCACTGAGGAATCACCCTCCATCTCTTCTAGTTATGAGGAGGTCAGCAGAGGGAGCTCAAGCCATCCTTATAATAGCAACGACACCTTTGATTTGAGTGCAGGACTTCCATATCCAAAAGTTGACCCCAAGTAA 2883 0.4076 MSQRVLVVLLLVLNYVLVAEGETADGDLTTFLSLINTWENTPPNWVGSDPCDDWVGIKCKNSHITSITLSSTGLAGQLSGDIGSLSELETLDLSYNKDLTGPLPESIGELKKLATLILVGCSFKGPIPDSIGNMQELLFLSLNSNSFSGPIPHSIGNLSKLYWLDLADNQLQGNIPVSSGDISGLDKLHHAKHFHLGKNNLSGSIPPQLFSSEMALIHVLLESNQLTDKIPPTLGLVQSLEVVRLDGNSLNGPVPPNINNLTHVQDLYLSNNKLSGSLPNLTGMNALSYLDMSNNSFKPLDFPGWFSTLKSLTTLKMERTQLQGQVPTSLFTLINLQIVVLKDNKINGTLDIGSSYSNQLRLVDFETNSIDSFEQKDEVPNVKIKIILKDNPICQENGELESYCSSSQPNVSYSTPLNNCQPGTCSSEQILSPNCICAYPYSGTLTFRSPPFLDFDNKTYYSMLEEGLMNSFKSHFLPVDSVLLSHPSKDSTQYLELSLQVFPSGQNHFNRTGAFSIGFLLSNQTFKPPKVFGPFYFVGDKYEHFENSEGLTESSKSSNIGIIIGAAVGGLVLLVLLLLAGLYAFRQKKRAEKAIGQSNPFRRWDTASSKSEVPQLTEARMFSFEELKKYTKNFSQVNGIGSGGFGKVYKGNLPNGQVIAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLVGFCFEHEEQMLVYEYVQNGSLKDALSGKSGIRLDWIRRLKIALGTARGLAYLHELVNPPIIHRDIKSNNILLDDRLNAKVSDFGLSKSMVDSEKDHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPLERGKYIVKEVRNALDKTKGSYGLDEIIDPAIGLASTTLTLSGFDKFVDMTMTCVKESGSDRPKMSDVVREIENILKSAGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSAGLPYPKVDPK* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2295 960 CDD STKc_IRAK 640 909 - -
Gso7g2295 960 Pfam Protein tyrosine and serine/threonine kinase 638 903 IPR001245 GO:0004672|GO:0006468
Gso7g2295 960 Gene3D Phosphorylase Kinase; domain 1 604 709 - -
Gso7g2295 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Gso7g2295 960 SUPERFAMILY Protein kinase-like (PK-like) 620 939 IPR011009 -
Gso7g2295 960 SMART serkin_6 634 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2295 960 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524
Gso7g2295 960 Gene3D Ribonuclease Inhibitor 283 404 IPR032675 -
Gso7g2295 960 SUPERFAMILY L domain-like 58 424 - -
Gso7g2295 960 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 944 - -
Gso7g2295 960 MobiDBLite consensus disorder prediction 910 960 - -
Gso7g2295 960 Gene3D Ribonuclease Inhibitor 181 282 IPR032675 -
Gso7g2295 960 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
Gso7g2295 960 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 944 - -
Gso7g2295 960 ProSiteProfiles Protein kinase domain profile. 634 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso7g2295 960 Gene3D Transferase(Phosphotransferase) domain 1 710 931 - -
Gso7g2295 960 MobiDBLite consensus disorder prediction 914 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2295 Gso-Chr7 46533576 46540313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2295 1 960 Receptor kinase-like Gene Family AT5G49760 54.611 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso7g2295 PK_Tyr_Ser-Thr 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2295 - - gmx:100811702 1850.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2295 7 46533576 46540313 Gso15g1050 15 9924898 9932043 PCT
Gso7g2295 7 46533576 46540313 Gso9g0165 9 1453192 1460556 PCT